Gene
| Gene Model ID | pfu_aug2.0_63.1_10202 |
|---|---|
| Locus | scaffold63.1 : 159341 ... 169345 : - |
| To GenomeBrowser | scaffold63.1:159341..169345 |
| Genes list of scaffold | scaffold63.1 |
| Synonym | pfu_aug1.0_3010.1_08514 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_63.1_10202.t1 | 1 | 1 | Ras | 2 | 99 | 3.2e-16 | 59.1 | 5.1e-20 | 3.8e-16 | 58.9 |
| pfu_aug2.0_63.1_10202.t1 | 1 | 1 | Miro | 8 | 94 | 9.8e-10 | 38.9 | 1.7e-13 | 1.3e-09 | 38.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_63.1_10202.t1 | gi|678008120|ref|XP_009080057.1| | PREDICTED: ras-like protein family member 12, partial [Acanthisitta chloris] | 3.0e-24 |
| pfu_aug2.0_63.1_10202.t1 | gi|694631264|ref|XP_009491470.1| | PREDICTED: ras-like protein family member 12, partial [Pelecanus crispus] | 3.0e-24 |
| pfu_aug2.0_63.1_10202.t1 | gi|632938205|ref|XP_007904123.1| | PREDICTED: ras-like protein family member 12 [Callorhinchus milii] | 1.0e-23 |
| pfu_aug2.0_63.1_10202.t1 | gi|699678036|ref|XP_009902187.1| | PREDICTED: ras-like protein family member 12 [Picoides pubescens] | 2.0e-23 |
| pfu_aug2.0_63.1_10202.t1 | gi|701383358|ref|XP_009993632.1| | PREDICTED: ras-like protein family member 12, partial [Chaetura pelagica] | 4.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_63.1_10202.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_63.1_10202.t1 atggagtatgacccagaaatagaggatacatatacaaagcatgaagatatagatggacacgagatgcgaatacatataat ggacacttacgacaaggaggacagcgatcctatgagtgatcctatgaggtacctacgatgggctgacgctttcatgatcg tgtatagtataacatgtcgactcagctttgacaaagctcaagaatatctgaacatcatatgtcaacacgctcagtctgtc aacaggaactgtccaatggctttggtgggaaacaaaatagacctggaaagatacagatgctggcttgagggggtccaagg agcaggaggaaaccggagtactcggagaaaactcccctgcagaggcctgggtgggagatcacccacctctcacataagac cctttgccgaaactgagattcgatcccgggaccttagaggtgagaagcgagcgcgctaccactgcgctaacccggccgtc aatgtggatttgattttgaaactgttgtgggtttcctttgcgttgagataa |
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Protein
| Protein ID | pfu_aug2.0_63.1_10202.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_63.1_10202.t1 MEYDPEIEDTYTKHEDIDGHEMRIHIMDTYDKEDSDPMSDPMRYLRWADAFMIVYSITCRLSFDKAQEYLNIICQHAQSV NRNCPMALVGNKIDLERYRCWLEGVQGAGGNRSTRRKLPCRGLGGRSPTSHIRPFAETEIRSRDLRGEKRARYHCANPAV NVDLILKLLWVSFALR |
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