Gene
| Gene Model ID | pfu_aug2.0_63.1_10204 |
|---|---|
| Locus | scaffold63.1 : 183185 ... 197685 : + |
| To GenomeBrowser | scaffold63.1:183185..197685 |
| Genes list of scaffold | scaffold63.1 |
| Synonym | pfu_aug1.0_892.1_51115 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_63.1_10204.t1 | 1 | 1 | PDCD9 | 161 | 341 | 7.7e-11 | 41.4 | 1.7e-14 | 2.5e-10 | 39.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_63.1_10204.t1 | gi|676460063|ref|XP_009055501.1| | hypothetical protein LOTGIDRAFT_228627 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_63.1_10204.t1 | gi|675868976|ref|XP_009020048.1| | hypothetical protein HELRODRAFT_161929 [Helobdella robusta] | 4.0e-33 |
| pfu_aug2.0_63.1_10204.t1 | gi|597746529|ref|XP_007235275.1| | PREDICTED: 39S ribosomal protein L37, mitochondrial [Astyanax mexicanus] | 1.0e-28 |
| pfu_aug2.0_63.1_10204.t1 | gi|130502076|ref|NP_001076324.1| | 39S ribosomal protein L37, mitochondrial [Danio rerio] | 3.0e-27 |
| pfu_aug2.0_63.1_10204.t1 | gi|704572274|ref|XP_010185840.1| | PREDICTED: 39S ribosomal protein L37, mitochondrial [Mesitornis unicolor] | 7.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_63.1_10204.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_63.1_10204.t1 atgaggttgacaggtgttctttgtgtccgtgagaatacacattaccgtcaatttaagaccatgtggaaaagttacaaatt caaagaacagagactcaaattgcctctaccactacaagagaaaaatgtggagatcatacgaggtaaagattttctgagag gtctcgatacaaaacaagtggttgtggcagcagagcctgaccctgtcccaaccccgtccctgaagaaacacccaaactac catgagaagccagcactcacctacactaatgagatacagtttattgaagagttatgggacttaganaaagtctgtatgtg tggctgtaagtctggatgtcaaagtctgtatgtgtggctgtatgtttggatgtcaaagtctgtctgtctggatgacaaat tctctcggtctatatgtctggatgttaaagtctttatgtgtggctgtgacctgatcaacatacgagcacgaagcgagttt ctgatatcatccagagagtttttgccgtgctttgctgatactgatgcagtcaaggagtccgtagattataccataccaga tatgcatcctgtgaacccaacaattgatctcagaatggaaaatctctactcggaacaaaatatacctgcattccgtgttc cctttgagtttgataaaccacaaactttatttcatctcaataaggatctgagtaaacttgtacataggcagaatcgagct ttgatgtttctattgggatatgccatggctgctgctaggagaaaatatggggatgatgtcactgacttgcctgaaccaat ctgtgtccagtgtgtcaacatgaacgaagctacgttaaatttcactttctttcaattgaacactatggatttctccagtg atagtggtgtgaaaaactttgtatggttcgactctggaaaccatttgtttgccaagcatttaaccaagccctggttgaaa gatccagagtttaagataaatagatatgacagttatagtgaggaacccttaaagaaactcttagccgttgttatgtatgg tttatcaaatttataa |
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Protein
| Protein ID | pfu_aug2.0_63.1_10204.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_63.1_10204.t1 MRLTGVLCVRENTHYRQFKTMWKSYKFKEQRLKLPLPLQEKNVEIIRGKDFLRGLDTKQVVVAAEPDPVPTPSLKKHPNY HEKPALTYTNEIQFIEELWDLXKVCMCGCKSGCQSLYVWLYVWMSKSVCLDDKFSRSICLDVKVFMCGCDLINIRARSEF LISSREFLPCFADTDAVKESVDYTIPDMHPVNPTIDLRMENLYSEQNIPAFRVPFEFDKPQTLFHLNKDLSKLVHRQNRA LMFLLGYAMAAARRKYGDDVTDLPEPICVQCVNMNEATLNFTFFQLNTMDFSSDSGVKNFVWFDSGNHLFAKHLTKPWLK DPEFKINRYDSYSEEPLKKLLAVVMYGLSNL |
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