Gene
| Gene Model ID | pfu_aug2.0_63.1_10208 |
|---|---|
| Locus | scaffold63.1 : 297325 ... 334625 : + |
| To GenomeBrowser | scaffold63.1:297325..334625 |
| Genes list of scaffold | scaffold63.1 |
| Synonym | pfu_aug1.0_977.1_36754 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_63.1_10208.t1 | 1 | 1 | EST1 | 7 | 99 | 4.5e-12 | 46.1 | 4.8e-15 | 2.3e-11 | 43.7 |
| pfu_aug2.0_63.1_10208.t1 | 2 | 1 | EST1_DNA_bind | 107 | 310 | 5.60519e-45 | 153.5 | 1.20512e-43 | 5.9e-40 | 137.2 |
| pfu_aug2.0_63.1_10208.t1 | 2 | 2 | EST1_DNA_bind | 647 | 746 | 5.60519e-45 | 153.5 | 2.1e-07 | 0.001 | 18.3 |
| pfu_aug2.0_63.1_10208.t1 | 1 | 1 | PIN_4 | 871 | 951 | 3.4e-06 | 27.2 | 2.7e-09 | 1.3e-05 | 25.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_63.1_10208.t1 | gi|676458095|ref|XP_009054864.1| | hypothetical protein LOTGIDRAFT_232390 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_63.1_10208.t1 | gi|542177570|ref|XP_005495385.1| | PREDICTED: protein SMG5 [Zonotrichia albicollis] | 0.0 |
| pfu_aug2.0_63.1_10208.t1 | gi|723564307|ref|XP_010303019.1| | PREDICTED: protein SMG5, partial [Balearica regulorum gibbericeps] | 0.0 |
| pfu_aug2.0_63.1_10208.t1 | gi|694831167|ref|XP_009462930.1| | PREDICTED: protein SMG5 [Nipponia nippon] | 0.0 |
| pfu_aug2.0_63.1_10208.t1 | gi|705668376|ref|XP_010114099.1| | PREDICTED: protein SMG5, partial [Chlamydotis macqueenii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_63.1_10208.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_63.1_10208.t1 atgcatgtgaggccgggtagttcattggaggcagcattccgtacccacctggctggtgccactgggtattacaaccattt actgttccgtctacaaacagagtttggtttatgtcttcatggaatcctagatctgtatctgatgccagacacaaaaccag ggctcaaaaagtcatcgttagtgcagaattcacggagaaaggatgttactcctgcagtgttagagtgggctaacaaagca tgccatcgtactctcatctgtcttggtgatattgcacgataccagcaggaatttgatcgtggactgagtcgttctgcggc acagagatactaccataaagccatagtcatgtgtcctgataacggcatgccacataatcagctgggtacactaagcggta tgcggtatttccagtgcgaggcagcttatcattacatcagatgtatggtatgtgagaaaccatttgacggtgctgagggc aacttggaccgcttatttgaaaagaatcgaaaaagattccgtgaaatacagcaaatgtcatcctcaacattagctcctga gttacaaaggcaacatgatgtgaagtttttcttgatccattttctacacttactggatgttttctttgatgccaacaaaa ggatatcagcgggagagttacaggacagctgtcagtcggctctacagagttttaacctgtgtatgttctacaaaccagac ctgtatgctgaggaggacagccgagacgagaacctacagtatttggacgatgatctggttttcaaactcgtcatcatgtg tatggccaccatacatctactacaaatcagaggatccaaacacgtgactgcggccaccgcctttttactggctctgttct ctcacatacttaatcatgttgtcattcgcttgcacggtgctctgtatgagagggaaaacccaaacaaactactcaaccat cagattgtacaaaatggtgaggagttgtcagatgtagactctggagagatgtgtaacggaccgtccgaggggaatgatcg gcaagataaactgacctccgggagggacggtgagggggagaatacatctaaacaggagggtaacaaaccagagcaggtca aaggggagggagtcaagaaaaacatcatacagcagaaaaatatgaagtctagtcgtgtaaagaacctgaggcggagacga atgcgttgtcgagatgacagtagtgacagttcaggattatctgatgtctctgatctaagtgaaggagatgaccacttgtc tgatactttcttgtcagaagagtccgaagaagaagaagagtttgtaggattttttgctcacgactcggactctgacctct cagacaatttgatggagagccaagaattggagccaggattttctgctgagtcagccttaacaaaatctggtaaagatgag cgagtagcaaatgtcaactctaaccatactactgacaggagttctcatcatggtactacctccgtaggttctcaggggac ggtacagaacgactcctctatctggactagcgagaaagactaccttgctcacttctcctctgaactattaacatcgtcat caaccactctgctaggtcagaactttaaactgtctacgacaggtacaaaaactaatgacctcaatgttcaacagatagag aattgtcaggaagtgatgcagggcaagagacaggttccagtgccacctggatttgctcagtcatcagaagctagacatgt ggcagagataacagacaagcttgctaactttgttatagagactgacactgaagctagtattataccaactgatgcagagc aatctggctgtgatgaatcaacaaccgaggctgatgaccagggtagtacaaccgagtcggctgaaggacctgaaacggag cacagatttttacagaacacattggatgccgtacaaagtgaggggttgttagccatcgtcaaagtcatgtgtgattggat gaaatgtaatacaggtgtgatcatgacgtgtgcacagagctctcagtccctgtggcatagactttccgtacttctcaata ttcttcctaaagaaactgtgatagcagaacatgaccagtgctggttagatgaactgaagactgtgttaacaacaaccaga catggagagtggatgcaggtgttcccactcagagaggatatcaatctctggctgttcactcctctctctgaggctcataa tctgatagaattttctaacaggaggagggggcaattatctgaaatacaagagtgttttctgagaataggatgtctaagac aatttggtcacttcctgtcagagctcgagaacttgatgttccggtatgatacgacattagatgctttcattggtccatct caaccagtcagtgcagaggaaaatcaaagagaggctatggacagactggcccatgaggagagtaggcgtaaccatacttt attgatatataaacatcatttgaaatgtaaacttaatttggatgaccactgtctaagaggtatggctgaggtaagccagt tggaggggtcattggagaagacagactacacccacttccccccttacctgatccctgataccagatgtctgtgtgagtcc ctcagctttgtccgacagcttgtacagacaggcaagggaatcatcatcattccattatcagtaattgatacattagactt tatgaagaaggattccgtaggagctagggatgctataagatggttagaggccgagttccgcaagggaaacaggtacatca gagcccaaaaaagtaatgagaagcattcagaaaatattccaaagaatttgaagaaaaccaacagagaagcatggtgtgtg tatgagatggtagcatgtgcccgataccttgcccagcaaggtggtgacatcagcaccgccaacatggtggccatcttgtc aacaaagaatttacagcttatgccgtacccacagcctctgaagaaagccctcgctaactgtcaacaagcagggatttcac tggagaatgtaccactattcaccaacaagtggaaggaccttctgaagagtaacggctga |
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Protein
| Protein ID | pfu_aug2.0_63.1_10208.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_63.1_10208.t1 MHVRPGSSLEAAFRTHLAGATGYYNHLLFRLQTEFGLCLHGILDLYLMPDTKPGLKKSSLVQNSRRKDVTPAVLEWANKA CHRTLICLGDIARYQQEFDRGLSRSAAQRYYHKAIVMCPDNGMPHNQLGTLSGMRYFQCEAAYHYIRCMVCEKPFDGAEG NLDRLFEKNRKRFREIQQMSSSTLAPELQRQHDVKFFLIHFLHLLDVFFDANKRISAGELQDSCQSALQSFNLCMFYKPD LYAEEDSRDENLQYLDDDLVFKLVIMCMATIHLLQIRGSKHVTAATAFLLALFSHILNHVVIRLHGALYERENPNKLLNH QIVQNGEELSDVDSGEMCNGPSEGNDRQDKLTSGRDGEGENTSKQEGNKPEQVKGEGVKKNIIQQKNMKSSRVKNLRRRR MRCRDDSSDSSGLSDVSDLSEGDDHLSDTFLSEESEEEEEFVGFFAHDSDSDLSDNLMESQELEPGFSAESALTKSGKDE RVANVNSNHTTDRSSHHGTTSVGSQGTVQNDSSIWTSEKDYLAHFSSELLTSSSTTLLGQNFKLSTTGTKTNDLNVQQIE NCQEVMQGKRQVPVPPGFAQSSEARHVAEITDKLANFVIETDTEASIIPTDAEQSGCDESTTEADDQGSTTESAEGPETE HRFLQNTLDAVQSEGLLAIVKVMCDWMKCNTGVIMTCAQSSQSLWHRLSVLLNILPKETVIAEHDQCWLDELKTVLTTTR HGEWMQVFPLREDINLWLFTPLSEAHNLIEFSNRRRGQLSEIQECFLRIGCLRQFGHFLSELENLMFRYDTTLDAFIGPS QPVSAEENQREAMDRLAHEESRRNHTLLIYKHHLKCKLNLDDHCLRGMAEVSQLEGSLEKTDYTHFPPYLIPDTRCLCES LSFVRQLVQTGKGIIIIPLSVIDTLDFMKKDSVGARDAIRWLEAEFRKGNRYIRAQKSNEKHSENIPKNLKKTNREAWCV YEMVACARYLAQQGGDISTANMVAILSTKNLQLMPYPQPLKKALANCQQAGISLENVPLFTNKWKDLLKSNG |
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