Gene
| Gene Model ID | pfu_aug2.0_63.1_10216 |
|---|---|
| Locus | scaffold63.1 : 498027 ... 502131 : - |
| To GenomeBrowser | scaffold63.1:498027..502131 |
| Genes list of scaffold | scaffold63.1 |
| Synonym | pfu_aug1.0_15439.1_61494 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mitochondrial isoform x1 | GO:0004322 GO:0005739 GO:0006091 GO:0007005 GO:0008199 GO:0010035 GO:0016226 GO:0019538 GO:0043066 GO:0043085 GO:0048522 GO:0048640 GO:0051128 GO:0051241 GO:0051339 GO:0051536 GO:0051716 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_63.1_10216.t1 | 1 | 1 | Frataxin_Cyay | 71 | 180 | 2.2e-34 | 117.4 | 2.1e-38 | 3.0e-34 | 117.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_63.1_10216.t1 | gi|676477475|ref|XP_009061124.1| | hypothetical protein LOTGIDRAFT_126633 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_63.1_10216.t1 | gi|746865929|ref|XP_011064008.1| | PREDICTED: frataxin homolog, mitochondrial [Acromyrmex echinatior] | 0.0 |
| pfu_aug2.0_63.1_10216.t1 | gi|402897579|ref|XP_003911830.1| | PREDICTED: frataxin, mitochondrial isoform X1 [Papio anubis] | 5.60519e-45 |
| pfu_aug2.0_63.1_10216.t1 | gi|635073972|ref|XP_007967621.1| | PREDICTED: frataxin, mitochondrial isoform X1 [Chlorocebus sabaeus] | 7.00649e-45 |
| pfu_aug2.0_63.1_10216.t1 | gi|383847164|ref|XP_003699225.1| | PREDICTED: frataxin homolog, mitochondrial [Megachile rotundata] | 1.96182e-44 |
Transcript
| Transcript ID | pfu_aug2.0_63.1_10216.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_63.1_10216.t1 atgctcagaacaacaagtaaaagactaaatcttgtggcgttcagacgattcaatgcagtttttcaggtagacagtccggg ccccaatactttgtgtacggtagagaatgcttgtccaatttacaggaaagttagcacaagaatgaaatggaaaagtatga agacattcaaagaattttctacgtctaaacaattatatcatccagaattgtccagtaatgattatgaagttgttgctgat gagacattagattcactcacagaattttttgaagatttacctgagagattacgctgtgacgaggagtatgatacatcata cgggagtggtgtactgacagtgaagatcagtaataagtggggaacgtatgtaatcaacaaacaaactccaaacaaacaag tatggttgtcatctcctaaaagtggtcccaagaggtatgactttatggaaggtacatggatctataagcatgatggtaga acacttcatcaagtattgacagaggaaatatctgaagctatcggtacggagatagattgcacaaaatgtgcttatggcaa gcaggacacgagctga |
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Protein
| Protein ID | pfu_aug2.0_63.1_10216.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_63.1_10216.t1 MLRTTSKRLNLVAFRRFNAVFQVDSPGPNTLCTVENACPIYRKVSTRMKWKSMKTFKEFSTSKQLYHPELSSNDYEVVAD ETLDSLTEFFEDLPERLRCDEEYDTSYGSGVLTVKISNKWGTYVINKQTPNKQVWLSSPKSGPKRYDFMEGTWIYKHDGR TLHQVLTEEISEAIGTEIDCTKCAYGKQDTS |
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