Gene
| Gene Model ID | pfu_aug2.0_63.1_10219 |
|---|---|
| Locus | scaffold63.1 : 539731 ... 556441 : + |
| To GenomeBrowser | scaffold63.1:539731..556441 |
| Genes list of scaffold | scaffold63.1 |
| Synonym | pfu_aug1.0_446.1_29259 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| f-box wd repeat-containing protein 5 | GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_63.1_10219.t1 | 2 | 1 | F-box-like | 31 | 70 | 1.0e-10 | 41.1 | 2.8e-14 | 1.4e-10 | 40.7 |
| pfu_aug2.0_63.1_10219.t1 | 2 | 1 | WD40 | 108 | 140 | 3.1e-06 | 26.8 | 3.5e-09 | 1.7e-05 | 24.4 |
| pfu_aug2.0_63.1_10219.t1 | 2 | 2 | WD40 | 452 | 468 | 3.1e-06 | 26.8 | 0.28 | 1400.0 | -0.6 |
| pfu_aug2.0_63.1_10219.t1 | 2 | 2 | F-box-like | 472 | 490 | 1.0e-10 | 41.1 | 1.1 | 5200.0 | -2.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_63.1_10219.t1 | gi|676477675|ref|XP_009061181.1| | hypothetical protein LOTGIDRAFT_126606 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_63.1_10219.t1 | gi|260828799|ref|XP_002609350.1| | hypothetical protein BRAFLDRAFT_236265 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_63.1_10219.t1 | gi|676444169|ref|XP_009050342.1| | hypothetical protein LOTGIDRAFT_92511, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_63.1_10219.t1 | gi|749772497|ref|XP_011141785.1| | PREDICTED: F-box/WD repeat-containing protein 5 [Harpegnathos saltator] | 0.0 |
| pfu_aug2.0_63.1_10219.t1 | gi|56118516|ref|NP_001008069.1| | F-box and WD repeat domain containing 5 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_63.1_10219.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_63.1_10219.t1 atgccgatacattgtaatgtgataggtgacagaagaagtcctacagaagcagaggaagatgaggaatgttgtagtatttg gcaggagacccctgattctctcctgttacatatcttctactctctggatgcccatggtctagtatcagcttcacaagctt gtaagacttggcacagagtggctcaggatgagagtttatggcgtaacctgatgtatgtgaagtttggtataaagtgtcac caactagccccgggaaagaggagctggcaggcggagtacaaacgactgtattaccatgctcctacagaactcagcgagaa cctaactctacacagtgacgaggtgttacatgtcagcttctcgcatcgaggggatatgttctctacaacctcaaaggatg ccaccatcaaggtttggaatgtaggatacccaaccacacagaaattcagccaggatttccgagagcttttgtcctgggac ttcacacagttttcctgttttaatgctagtgattcaatgctactggtatccagtgtcaaaaccactgattacctagaaag gaggggttatgtagcaatattatcattactacacaattttgatatcttacgagttgtatccatggatccttcacagcttt ttggtgcatggttagacaactctcactttctcggaggattcctagaaatcagtttggatagatttgccacgacagtacag attgaagcctttgatatgtcagatcatgaattaccattggaaccaagtaaaatctccgtggaagaggggcttggttgtaa cttgttcacattcagtagtgaaacagcgagtctcatcaagttcttgactgtagctaacgttccttcaagacccctgattc agaactctttggaatctaagacattagaggaaagctcggaaagtgaaatctcttcacctggccatgatcttcgacagttt tatgagtgtaaaggatgtgaggaaatggaaagtcccgttccatctactagtgccaatattaacgttagtgcttgttcttg tgactcgccaggtgttgatctttgtgctgatatgactgacgaaatggaatcattgagaacggatagcgatcggaacagaa atctgatattcgttactggtgactttgccgtagcgctacatcaactaggaataaaaaatgtatcaccatcactacttgaa tccaaacaacgagcgtctggggaggacatcatggatagctcattagacggggactatgatcaagaagaacagcacatggt tgttaatttctgtaataacgatattcagctacgtcacatacgtaaatcagataaacctgatcacctgatagatctgtacg gacatgttacaggactgtgtctatctcatgaccataggtacctctttctgaactgccgaccttggcatgggaatgtagat cgttctgatccttgggccacgccggatctctctaacaacattgagatacgcgtcatagacctgtggaccatgaaggacac aggtgtacagtatatgggacataaaggtttctccaaatccaccatgtgctgttttgtgttcttagacgttagtctagact atgttggaagggtgaaaactcatggtctggataaaataatccaaaaatcaatcaacttaaggtattacgggtataatacg ctacttctggttgttttcataaaagaaaaatttaaaaccttgaagttggacaaagaagcacgacttcggcaatgtttggg accatgcattttcatggcgagttcagtgaaacggtaa |
|
Protein
| Protein ID | pfu_aug2.0_63.1_10219.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_63.1_10219.t1 MPIHCNVIGDRRSPTEAEEDEECCSIWQETPDSLLLHIFYSLDAHGLVSASQACKTWHRVAQDESLWRNLMYVKFGIKCH QLAPGKRSWQAEYKRLYYHAPTELSENLTLHSDEVLHVSFSHRGDMFSTTSKDATIKVWNVGYPTTQKFSQDFRELLSWD FTQFSCFNASDSMLLVSSVKTTDYLERRGYVAILSLLHNFDILRVVSMDPSQLFGAWLDNSHFLGGFLEISLDRFATTVQ IEAFDMSDHELPLEPSKISVEEGLGCNLFTFSSETASLIKFLTVANVPSRPLIQNSLESKTLEESSESEISSPGHDLRQF YECKGCEEMESPVPSTSANINVSACSCDSPGVDLCADMTDEMESLRTDSDRNRNLIFVTGDFAVALHQLGIKNVSPSLLE SKQRASGEDIMDSSLDGDYDQEEQHMVVNFCNNDIQLRHIRKSDKPDHLIDLYGHVTGLCLSHDHRYLFLNCRPWHGNVD RSDPWATPDLSNNIEIRVIDLWTMKDTGVQYMGHKGFSKSTMCCFVFLDVSLDYVGRVKTHGLDKIIQKSINLRYYGYNT LLLVVFIKEKFKTLKLDKEARLRQCLGPCIFMASSVKR |
|