Gene
| Gene Model ID | pfu_aug2.0_63.1_10221 |
|---|---|
| Locus | scaffold63.1 : 574042 ... 582240 : - |
| To GenomeBrowser | scaffold63.1:574042..582240 |
| Genes list of scaffold | scaffold63.1 |
| Synonym | pfu_aug1.0_307.1_50780 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| krr1 small subunit processome component homolog | GO:0000462 GO:0005730 GO:0016020 GO:0032040 GO:0044822 GO:0045171 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_63.1_10221.t1 | 2 | 1 | KH_3 | 145 | 169 | 5.4e-06 | 25.9 | 3.0e-08 | 0.00011 | 21.7 |
| pfu_aug2.0_63.1_10221.t1 | 2 | 2 | KH_3 | 279 | 296 | 5.4e-06 | 25.9 | 0.09 | 330.0 | 1.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_63.1_10221.t1 | gi|291230085|ref|XP_002735003.1| | PREDICTED: KRR1 small subunit processome component homolog, partial [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_63.1_10221.t1 | gi|260786115|ref|XP_002588104.1| | hypothetical protein BRAFLDRAFT_124941 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_63.1_10221.t1 | gi|488566734|ref|XP_004485253.1| | PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome component homolog [Dasypus novemcinctus] | 0.0 |
| pfu_aug2.0_63.1_10221.t1 | gi|532089589|ref|XP_005330491.1| | PREDICTED: KRR1 small subunit processome component homolog [Ictidomys tridecemlineatus] | 0.0 |
| pfu_aug2.0_63.1_10221.t1 | gi|187469407|gb|AAI67117.1| | LOC779544 protein [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_63.1_10221.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_63.1_10221.t1 atgcgagggaagaaaagcagaaaagagccgtcaaactctgaggagttacttgaagtgccacctggatggaaagaccctgg cataacaaaggaagacaaccctcatggaatgttggcagagagctcatttgcaacattgtttccaaaatacagagaaaaat acctcagggagtgctggcctctggtaaaaaaagtgttaagtgactataatataaaagcagagttggatgtagcagaaggc agcatgactgtattaacaacaagaaagacatgggatccatttatgatcataaaagccagagatatgatcaaacttctagc tcgtagtgtcccttatgaacaggcggttagaattctagaagatgatatggcctgtgatatcatcaagattggttcgttgg tccgtaataaggagaggtttgtgaagagacgtcgtaggctgataggaccaaacggctcgactctcaaagccatcgagata ctcacaaactgttatgtcctggtccaaggaaacacagtgtcagctttaggtccacacaaagggctcaaagaggtcagaaa aattgcagaggagaccatgaaaaatatacatccaatatacaatttaaagacactgatgattaaaagagagttagagaaag accctaagctaaaaaatgaaagctgggacagatttttaccaaagtttaagtcgaagaatatcagcaaaaggaaacagcaa ccaaagaagaaaaagattaagaaagcctatactccattccctccacctcagcctgaaagcaaggtcgacaaggaactggc ttcaggtgaatacttccttaaatctggtcagaagaaagcaaaaattcaatttgagaagagggaaaaacagaaagagtctg ttgagaggaagaaagagaaacgtgccatggcttttgtggcacctgaagaacctgaaccaatcgcaaagaaacagaaaact tcagacgttaatgttgatgatctcaagaagaagataaaaaaggcacagaaattcaaaacaaggaaaacggacaaggtttc ttga |
|
Protein
| Protein ID | pfu_aug2.0_63.1_10221.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_63.1_10221.t1 MRGKKSRKEPSNSEELLEVPPGWKDPGITKEDNPHGMLAESSFATLFPKYREKYLRECWPLVKKVLSDYNIKAELDVAEG SMTVLTTRKTWDPFMIIKARDMIKLLARSVPYEQAVRILEDDMACDIIKIGSLVRNKERFVKRRRRLIGPNGSTLKAIEI LTNCYVLVQGNTVSALGPHKGLKEVRKIAEETMKNIHPIYNLKTLMIKRELEKDPKLKNESWDRFLPKFKSKNISKRKQQ PKKKKIKKAYTPFPPPQPESKVDKELASGEYFLKSGQKKAKIQFEKREKQKESVERKKEKRAMAFVAPEEPEPIAKKQKT SDVNVDDLKKKIKKAQKFKTRKTDKVS |
|