Gene
| Gene Model ID | pfu_aug2.0_631.1_04413 |
|---|---|
| Locus | scaffold631.1 : 91509 ... 101795 : - |
| To GenomeBrowser | scaffold631.1:91509..101795 |
| Genes list of scaffold | scaffold631.1 |
| Synonym | pfu_aug1.0_4500.1_01750 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: hemicentin-1 | GO:0005576 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_631.1_04413.t1 | 1 | 1 | PAN_1 | 12 | 68 | 1.9e-06 | 27.5 | 8.3e-10 | 6.2e-06 | 25.8 |
| pfu_aug2.0_631.1_04413.t1 | 4 | 1 | TSP_1 | 31 | 35 | 7.4e-14 | 51.5 | 1.3 | 9600.0 | -3.2 |
| pfu_aug2.0_631.1_04413.t1 | 4 | 2 | TSP_1 | 77 | 103 | 7.4e-14 | 51.5 | 1.8 | 13000.0 | -3.7 |
| pfu_aug2.0_631.1_04413.t1 | 4 | 3 | TSP_1 | 165 | 215 | 7.4e-14 | 51.5 | 1.6e-10 | 1.2e-06 | 28.5 |
| pfu_aug2.0_631.1_04413.t1 | 4 | 4 | TSP_1 | 222 | 272 | 7.4e-14 | 51.5 | 5.5e-13 | 4.1e-09 | 36.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_631.1_04413.t1 | gi|395825220|ref|XP_003785837.1| | PREDICTED: LOW QUALITY PROTEIN: hemicentin-1 [Otolemur garnettii] | 5.0e-33 |
| pfu_aug2.0_631.1_04413.t1 | gi|507699050|ref|XP_004644044.1| | PREDICTED: hemicentin-1 [Octodon degus] | 1.0e-32 |
| pfu_aug2.0_631.1_04413.t1 | gi|533119373|ref|XP_005375138.1| | PREDICTED: hemicentin-1 [Chinchilla lanigera] | 2.0e-32 |
| pfu_aug2.0_631.1_04413.t1 | gi|694890699|ref|XP_009437975.1| | PREDICTED: hemicentin-1 isoform X3 [Pan troglodytes] | 5.0e-32 |
| pfu_aug2.0_631.1_04413.t1 | gi|694890697|ref|XP_009437971.1| | PREDICTED: hemicentin-1 isoform X2 [Pan troglodytes] | 6.0e-32 |
Transcript
| Transcript ID | pfu_aug2.0_631.1_04413.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_631.1_04413.t1 atgatttcctttgctgcttttggtgataaacacttagacgtggagaaccttaaaatgtacacgaccatgtcatataagat gtgtttaagggaatgcagtaaaacaatgcgatgcatgtctatcaatttcgacagaaaccagctagagtgttttcttttgg aaaccaaccacacagattctacactctcagatggtaatggatttacgcatgcttccccagaaaagggccagaaatgtgat gagtgtgagtcagatgacacctgcatacagcttcacaacggtcgtaatgtttgtatgaaaacagagtgtttcgatgaaag gccgacagtccaagatgcttcagcttcgcagtcaaataatccgccatttgtttccttcgggtgcctcacaggctacactg gagttggaagcctgaagtcatcaacatgtcgaccaggagaaccatggagttctatcaattaccgatgtgaaccgccagta catggaggatggtcgacatgggggaattacggtttctgtactgtaacatgtgacggaggaatataccatcgtatccgcac gtgcaccaaccccacaccaatgtatggcgggaactcttgtagcggttcagattcgtcatcgagcacgtgcaacacaaata attgtcctgtaaatggaggttggtcaagttggggttcctggggatcgtgtagtaaaacttgtggtggaggcactcaagat gcttatagatcatgtaataacccgtccccacaacatggcggaacttcctgttcaggttcatcgtctatatctcagtcatg caacaccgatggttgtggtggtggttggtggtttttaaaaaggagacgatga |
|
Protein
| Protein ID | pfu_aug2.0_631.1_04413.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_631.1_04413.t1 MISFAAFGDKHLDVENLKMYTTMSYKMCLRECSKTMRCMSINFDRNQLECFLLETNHTDSTLSDGNGFTHASPEKGQKCD ECESDDTCIQLHNGRNVCMKTECFDERPTVQDASASQSNNPPFVSFGCLTGYTGVGSLKSSTCRPGEPWSSINYRCEPPV HGGWSTWGNYGFCTVTCDGGIYHRIRTCTNPTPMYGGNSCSGSDSSSSTCNTNNCPVNGGWSSWGSWGSCSKTCGGGTQD AYRSCNNPSPQHGGTSCSGSSSISQSCNTDGCGGGWWFLKRRR |
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