Gene
| Gene Model ID | pfu_aug2.0_634.1_14406 |
|---|---|
| Locus | scaffold634.1 : 145767 ... 155995 : - |
| To GenomeBrowser | scaffold634.1:145767..155995 |
| Genes list of scaffold | scaffold634.1 |
| Synonym | pfu_aug1.0_24760.1_11644 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_634.1_14406.t1 | 2 | 1 | Lectin_C | 327 | 350 | 3.4e-09 | 37.2 | 0.22 | 1700.0 | -0.3 |
| pfu_aug2.0_634.1_14406.t1 | 2 | 2 | Lectin_C | 355 | 470 | 3.4e-09 | 37.2 | 3.4e-12 | 2.5e-08 | 34.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_634.1_14406.t1 | gi|260799435|ref|XP_002594701.1| | hypothetical protein BRAFLDRAFT_240469 [Branchiostoma floridae] | 1.0e-10 |
| pfu_aug2.0_634.1_14406.t1 | gi|260793462|ref|XP_002591731.1| | hypothetical protein BRAFLDRAFT_223290 [Branchiostoma floridae] | 2.0e-10 |
| pfu_aug2.0_634.1_14406.t1 | gi|542244506|ref|XP_005459160.1| | PREDICTED: C-type lectin domain family 4 member F-like [Oreochromis niloticus] | 3.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_634.1_14406.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_634.1_14406.t1 atgtccgagtcaacatcttttggcgttgttttacattatgacgtcactgttaaaagacgcaattccaacagacgtaacaa cgaagaagtgcgcaaaaattgcctacctcggacatttttcgctattacaaattttgatgtggaggctataacctgtttta aatgtaacggtgtggcgtttccgagggactgccctttcgtcgtagaatgcggaccacacgaggagtgttttgtggaccag ttggtgagtccagatggcaacatcaaatataacacaggatgccgagacagaacggcgtgtcagttggctggacggaagcg aaatgacgtcatcaggcgccaaggcgtcacaggagatcttaccacctgtacggcatgttgtgatgttgctcattgtaact atggcggttgcggagaaaaaggtttacctgataggagtaagagaggaccgatttgttatgactgctatcaacagagacaa gagactggctgtaaccaagtaaaaatatgtggacaagacgaggagtgtcacattatgaggtcgccgaattctcatcttga cttttcctttactacaggatgtatcagcaaagtgagatgtggagtcctgtcaatccttggaaagcgcgaggacgcatatg acgaagggggcgtgtcctcagaacgtcatcaaaggagtactggaatctgttttaactgctgtaatggcgacttatgtaat aaagcttgttctcctacaaatacaactggtacatcacctacgattccaatatcagtaactaatgcaaatacaatgacaac gtccggaggaaaatcgtcgacatcgccctcaaatgccatggcaacaaagatgaccgtgcccatttctcaaaccacatcgc ttacaaaaagctcgactactcgcaattctgcaatgtcaagcagtagtagtgtggcatcaaccactattgtatcaacatta agttcttcatcgtcatcgtcctccacaacaaaagtaccccataactgctctgcggacactgtgagatacaacaaccattg ttattacttctctaccgaaatcaaatactgggaggagtcacgacaattatgcaaaggaagaaacgcccaccttttgaaaa tagatgatatgaacgaagaattgttcatagaaaagacgctcagaggatttatgacggcggggaaaattccagcgaccttg tggggatactacatgggtgcccacctagtgcagggccagtgggagtgggaggatggcacgccagttgtattcgacgactg gggcctaaatgagcccgaccatccagacttccaaatatttgggctcatttttatgcccgggcattatgcgggcgattata aatggggaagccatagtgatatgcaaggaacatccagatatatttgtgaaagtgtacttcattag |
|
Protein
| Protein ID | pfu_aug2.0_634.1_14406.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_634.1_14406.t1 MSESTSFGVVLHYDVTVKRRNSNRRNNEEVRKNCLPRTFFAITNFDVEAITCFKCNGVAFPRDCPFVVECGPHEECFVDQ LVSPDGNIKYNTGCRDRTACQLAGRKRNDVIRRQGVTGDLTTCTACCDVAHCNYGGCGEKGLPDRSKRGPICYDCYQQRQ ETGCNQVKICGQDEECHIMRSPNSHLDFSFTTGCISKVRCGVLSILGKREDAYDEGGVSSERHQRSTGICFNCCNGDLCN KACSPTNTTGTSPTIPISVTNANTMTTSGGKSSTSPSNAMATKMTVPISQTTSLTKSSTTRNSAMSSSSSVASTTIVSTL SSSSSSSSTTKVPHNCSADTVRYNNHCYYFSTEIKYWEESRQLCKGRNAHLLKIDDMNEELFIEKTLRGFMTAGKIPATL WGYYMGAHLVQGQWEWEDGTPVVFDDWGLNEPDHPDFQIFGLIFMPGHYAGDYKWGSHSDMQGTSRYICESVLH |
|