Gene
| Gene Model ID | pfu_aug2.0_634.1_14414 |
|---|---|
| Locus | scaffold634.1 : 233341 ... 245688 : + |
| To GenomeBrowser | scaffold634.1:233341..245688 |
| Genes list of scaffold | scaffold634.1 |
| Synonym | pfu_aug1.0_4890.1_38004 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_634.1_14414.t1 | 1 | 1 | C1q | 126 | 257 | 1.5e-22 | 79.9 | 4.1e-26 | 2.0e-22 | 79.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_634.1_14414.t1 | gi|260786344|ref|XP_002588218.1| | hypothetical protein BRAFLDRAFT_118898 [Branchiostoma floridae] | 9.0e-12 |
| pfu_aug2.0_634.1_14414.t1 | gi|348534619|ref|XP_003454799.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 3-like [Oreochromis niloticus] | 2.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_634.1_14414.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_634.1_14414.t1 atggtgatatggaggagatctcctttgagactaccctgtattgatcacagcggaacacacccacaatggaagagatctcc agtaggactaccctgtattgatcacagcggaacacacccacaatggaagagatctccagtaggactaccctgtattgatc acagcggaacacatccacaatggaggagatctccagtaagactaccctgtattgatcacagcggaacacacccacaatgg aggggatctccagccgagcccgatgggaacaacttcaacatgttacaagtacaagttcatgcattgaatgctactgttgc tgcactcacatcaagagttgttctcctagagaaagaaacaaatatggctcccattgcctttttcgcggagctcggccata cccttgacaaacctaatgtaggatctcctgtcatctttgacgtggtacatcttaatgacggtaacgcttacaacaatata cacggagtcttcacagcaccagtctcaggactctaccatttcacactggaacttgctagtcctaatgaaggcagtgcttt acacaaggttcgcgtgcaaatgatgaggtcatggtatgtggttggatatgtctttctagatggagacggcccctactggt ctaagagctcagcaacggcaactcttcatttgtcacgtggcgacgatatatgggtgaaagtaatgtatcgtgacggacag gcacagattgcaggatcatcatatcattccatattttctggattcctaatcagatctgtctaa |
|
Protein
| Protein ID | pfu_aug2.0_634.1_14414.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_634.1_14414.t1 MVIWRRSPLRLPCIDHSGTHPQWKRSPVGLPCIDHSGTHPQWKRSPVGLPCIDHSGTHPQWRRSPVRLPCIDHSGTHPQW RGSPAEPDGNNFNMLQVQVHALNATVAALTSRVVLLEKETNMAPIAFFAELGHTLDKPNVGSPVIFDVVHLNDGNAYNNI HGVFTAPVSGLYHFTLELASPNEGSALHKVRVQMMRSWYVVGYVFLDGDGPYWSKSSATATLHLSRGDDIWVKVMYRDGQ AQIAGSSYHSIFSGFLIRSV |
|