Gene
| Gene Model ID | pfu_aug2.0_64.1_13512 |
|---|---|
| Locus | scaffold64.1 : 160716 ... 177889 : + |
| To GenomeBrowser | scaffold64.1:160716..177889 |
| Genes list of scaffold | scaffold64.1 |
| Synonym | pfu_aug1.0_1562.1_22652 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ribosomal protein l13a | GO:0000184 GO:0003735 GO:0005730 GO:0005925 GO:0006414 GO:0006415 GO:0006614 GO:0016020 GO:0019083 GO:0022625 GO:0044822 GO:0071346 GO:0097452 GO:1901194 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_64.1_13512.t1 | 2 | 1 | Ribosomal_L13 | 8 | 122 | 6.0e-27 | 94.2 | 9.3e-31 | 1.4e-26 | 93.0 |
| pfu_aug2.0_64.1_13512.t1 | 2 | 2 | Ribosomal_L13 | 173 | 184 | 6.0e-27 | 94.2 | 0.23 | 3400.0 | -2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_64.1_13512.t1 | gi|675890674|ref|XP_009030839.1| | hypothetical protein HELRODRAFT_158058 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_64.1_13512.t1 | gi|676480995|ref|XP_009062234.1| | hypothetical protein LOTGIDRAFT_183721 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_64.1_13512.t1 | gi|403299252|ref|XP_003940403.1| | PREDICTED: 60S ribosomal protein L13a isoform X2 [Saimiri boliviensis boliviensis] | 0.0 |
| pfu_aug2.0_64.1_13512.t1 | gi|395858350|ref|XP_003801534.1| | PREDICTED: 60S ribosomal protein L13a [Otolemur garnettii] | 0.0 |
| pfu_aug2.0_64.1_13512.t1 | gi|149757870|ref|XP_001491926.1| | PREDICTED: 60S ribosomal protein L13a [Equus caballus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_64.1_13512.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_64.1_13512.t1 atgggtttccaaacgaagcccattgttatcgatgccagagggcatctattaggcagactagcagctcttgtgtccaagac aattttacaagggcagaaagtagttgtggtgaggtgtgagggtatcaacatctctggaaacttctacaggaacaagttga agtacctgaaatacctacgtctgagatgcaatgtaaaaccaacacgtggtccattccacttcagggcacctagccgtatc ttctataaggcaatacgaggtatgctgccacacaagttaacacgagggaaggaggccctggctagattaaaggtatttga gggaatcccaccaccctacgacaaacagaagaggatggtcgtaccctcagctcttagagtcaacagactgaatccttgca ggaaatactgtgatttgaacagacttgcacatgaagttggatggaagtaccagggtgtcatatcaaccttggaagcaagg aggaaagtgaaatcaaagagattccatgataagaagaagcaacttacgttattaagagaaaaggctaaagcaaatgttgc aaagaagacggacaagcaccagaaagtgatcgaggcatatggctacaattaa |
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Protein
| Protein ID | pfu_aug2.0_64.1_13512.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_64.1_13512.t1 MGFQTKPIVIDARGHLLGRLAALVSKTILQGQKVVVVRCEGINISGNFYRNKLKYLKYLRLRCNVKPTRGPFHFRAPSRI FYKAIRGMLPHKLTRGKEALARLKVFEGIPPPYDKQKRMVVPSALRVNRLNPCRKYCDLNRLAHEVGWKYQGVISTLEAR RKVKSKRFHDKKKQLTLLREKAKANVAKKTDKHQKVIEAYGYN |
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