Gene
| Gene Model ID | pfu_aug2.0_64.1_13523 |
|---|---|
| Locus | scaffold64.1 : 395326 ... 429457 : - |
| To GenomeBrowser | scaffold64.1:395326..429457 |
| Genes list of scaffold | scaffold64.1 |
| Synonym | pfu_aug1.0_6217.1_59972 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| beta-parvin isoform x4 | GO:0003779 GO:0005829 GO:0005856 GO:0005886 GO:0005925 GO:0007155 GO:0030018 GO:0030027 GO:0030032 GO:0031532 GO:0034329 GO:0071963 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_64.1_13523.t1 | 2 | 1 | CH | 65 | 168 | 3.0e-21 | 75.4 | 6.7e-12 | 3.3e-08 | 33.5 |
| pfu_aug2.0_64.1_13523.t1 | 2 | 2 | CH | 232 | 335 | 3.0e-21 | 75.4 | 2.1e-14 | 1.0e-10 | 41.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_64.1_13523.t1 | gi|676481085|ref|XP_009062263.1| | hypothetical protein LOTGIDRAFT_210692 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_64.1_13523.t1 | gi|291229121|ref|XP_002734524.1| | PREDICTED: beta-parvin-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_64.1_13523.t1 | gi|402884510|ref|XP_003905724.1| | PREDICTED: beta-parvin isoform X4 [Papio anubis] | 0.0 |
| pfu_aug2.0_64.1_13523.t1 | gi|90086474|dbj|BAE91776.1| | 0.0 | |
| pfu_aug2.0_64.1_13523.t1 | gi|395541566|ref|XP_003772713.1| | PREDICTED: beta-parvin [Sarcophilus harrisii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_64.1_13523.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_64.1_13523.t1 atgctggacgtttcggtacaaaaacgttttgtaaatgaattacaagaagaaggaaagaatgctattgagtcccctaccag cccagccttgccagatataggtcctgagggctaccagttagatgagaatgaggagagatctatgatagagcctcaatcca gagatgatccaaaggtccgagagttaattaagatgcttttggactggattaatgacgtacttgccgatgacagaatcatc gtaaaggacatagaggaagatctgtttgatggacagattctacagaaactcatagagaagttggctggattaagagtaga agttcctgaagtaacgcagtctgaacaaggccagaaacagaagttacagattatactaaccgttataaacagaatactac agcatacaccacaatggaaccagaataaatggagcgtagacaccatacactgtaagaacctagtcgccattctacattta cttgttgccttagccagacatttccgagctcctatacgtctacctgacaatgtgtctgtcaacctggtagtagtaactaa aagagacggtatgttacagcctcgtagggtggcagaggacatcactactacaaacgaggatattggagccagatttgaga gagacgcttttgacacattgtttgatcatgcacctgacaaactgaatctggtgaaaaagacactggtcacttttgtaaac aaacaactgctgaagattaacctagaagtcacagatattgacagtcagttccatgatggtgtatatctagtattactgat gggcctattagaaggttattttgtaccactctatgattttcatctcacacccacagactttgatcataaggtccataatg tacagtttgcatttgagctgatgcaggatgcgggattggccaagcctaaagctagaccggaagatgtggtcaaccaagat ctgaagtcaacattaagggtattatacaacatattcaccaagtacaaagtatatccacacactgatggtattaataccgg ggttataatgtcaccgtgtcccatttatcaaattacaaatgtaaacaaacctgcatgtttggtttgtgaagatgatttaa aattcggcagtgactcaccccccatgtcaatatcatag |
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Protein
| Protein ID | pfu_aug2.0_64.1_13523.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_64.1_13523.t1 MLDVSVQKRFVNELQEEGKNAIESPTSPALPDIGPEGYQLDENEERSMIEPQSRDDPKVRELIKMLLDWINDVLADDRII VKDIEEDLFDGQILQKLIEKLAGLRVEVPEVTQSEQGQKQKLQIILTVINRILQHTPQWNQNKWSVDTIHCKNLVAILHL LVALARHFRAPIRLPDNVSVNLVVVTKRDGMLQPRRVAEDITTTNEDIGARFERDAFDTLFDHAPDKLNLVKKTLVTFVN KQLLKINLEVTDIDSQFHDGVYLVLLMGLLEGYFVPLYDFHLTPTDFDHKVHNVQFAFELMQDAGLAKPKARPEDVVNQD LKSTLRVLYNIFTKYKVYPHTDGINTGVIMSPCPIYQITNVNKPACLVCEDDLKFGSDSPPMSIS |
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