Gene
| Gene Model ID | pfu_aug2.0_643.1_11027 |
|---|---|
| Locus | scaffold643.1 : 45097 ... 68855 : - |
| To GenomeBrowser | scaffold643.1:45097..68855 |
| Genes list of scaffold | scaffold643.1 |
| Synonym | pfu_aug1.0_107168.1_35297 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_643.1_11027.t1 | 1 | 1 | Fringe | 2 | 165 | 1.2e-10 | 41.1 | 1.7e-13 | 6.5e-10 | 38.6 |
| pfu_aug2.0_643.1_11027.t1 | 1 | 1 | PhyH | 236 | 451 | 3.80032e-42 | 144.7 | 1.4013e-45 | 6.50062e-42 | 143.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_643.1_11027.t1 | gi|301611538|ref|XP_002935288.1| | PREDICTED: phytanoyl-CoA dioxygenase, peroxisomal [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_643.1_11027.t1 | gi|348536520|ref|XP_003455744.1| | PREDICTED: phytanoyl-CoA dioxygenase, peroxisomal-like isoform X1 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_643.1_11027.t1 | gi|148233666|ref|NP_001086497.1| | phytanoyl-CoA 2-hydroxylase [Xenopus laevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_643.1_11027.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_643.1_11027.t1 atgactgctcctaaaaatcacaaaacaaaggcaaaagtggttagggacacatggggtagaagatgtaacattatattgtt tatgagcacaaaagaggacaaatctatacctactatagcattaccagtaaaggaaggacgggcggatctatgggcaaaaa caaaagcagccttcaaatatatccataaacatcacaaggcagatgctgattggttcataaaggcagacgatgatacctat ataatcatggaaaatttgaaatatttcctccataatgaaagtttggagacaccagcgtatcatggaaggaggtttaagcc atggatagatcaaggctatatgtccggaggtgctggttatgttatcaacaggaaagccttagatttactagtcacaaagg gtcttactaactccagtatctgtaatcccaatgtcagtaaagacgaagatgtagaactggggaaatgttttgctaattta aacgtagaagcaggagacagtagagacagtcagggaagagagagatttctctcctacacaatggagcagcatattgtacc aggtgttattcctgcaagatataagagatatttctactacaatgaaacagaagcaagtccagtgtcaggtctacagacag ttggctcggggtcatacaattatacactagatagtccaatactgacagaggaacagcgaaagttctacgaaaagaatggc ttcctcgtcatcaaaaatctggtgccaaagaaggatcttgatacatatagacaacactttgaaaggatttgcaagcggga ggtatctgtacctatgctaacaataatgagagatgtagccatcaaagattcggagtatgttccaggacaacaagctgtga ccaaaatccagaactttcaactagacgatgtactattcgaatactgcaaacatcctcaggttgtgaaatatgtcgaggct tttgtgggacctaacattaatgctgtacataccatgttgatcaacaaaccacctgaccctgggaagaagtcatcccgaca cccattgcaccaggatttgcattatttccccttccggccagcagacagaatcgtctgttcttggacagcaatgcaaaccg tcaacagagccaatggctgtctagtggtacagccgggaactcataaaggcaacctgctagaacatggctaccctcagtgg gagggtggtgtaaatcacttgtatcacgggataatgcagtttgatccagacgcccctcgacatcacttggagatggaagc cggtgacaccgtctttttccatcctctactgattcacgggtctggaatgaacaaaactaacgacttcaggaaatcaatat cctgtcattacgccagtgctgactgttactttgtggacattaccgggacgatacaagaagctgctgttgacgaggtctat gagatggcaatcaaaaagggagcaaagacggagcaattagatattacttccatttcctgtcactatgccagcggggactg tgactttgtagatacatcaggcacagaacaagatttggcgcgagaagagttggaagacctgaccgcaaagaagctaggaa tagacaaggaccagataccgtgggaggacatctggagaaatagaagtaggcctgtaagagggacgtcatcattcaaagtc aatgatcgatggtga |
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Protein
| Protein ID | pfu_aug2.0_643.1_11027.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_643.1_11027.t1 MTAPKNHKTKAKVVRDTWGRRCNIILFMSTKEDKSIPTIALPVKEGRADLWAKTKAAFKYIHKHHKADADWFIKADDDTY IIMENLKYFLHNESLETPAYHGRRFKPWIDQGYMSGGAGYVINRKALDLLVTKGLTNSSICNPNVSKDEDVELGKCFANL NVEAGDSRDSQGRERFLSYTMEQHIVPGVIPARYKRYFYYNETEASPVSGLQTVGSGSYNYTLDSPILTEEQRKFYEKNG FLVIKNLVPKKDLDTYRQHFERICKREVSVPMLTIMRDVAIKDSEYVPGQQAVTKIQNFQLDDVLFEYCKHPQVVKYVEA FVGPNINAVHTMLINKPPDPGKKSSRHPLHQDLHYFPFRPADRIVCSWTAMQTVNRANGCLVVQPGTHKGNLLEHGYPQW EGGVNHLYHGIMQFDPDAPRHHLEMEAGDTVFFHPLLIHGSGMNKTNDFRKSISCHYASADCYFVDITGTIQEAAVDEVY EMAIKKGAKTEQLDITSISCHYASGDCDFVDTSGTEQDLAREELEDLTAKKLGIDKDQIPWEDIWRNRSRPVRGTSSFKV NDRW |
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