Gene
| Gene Model ID | pfu_aug2.0_645.1_17675 |
|---|---|
| Locus | scaffold645.1 : 13756 ... 38402 : + |
| To GenomeBrowser | scaffold645.1:13756..38402 |
| Genes list of scaffold | scaffold645.1 |
| Synonym | pfu_aug1.0_1385.1_07924 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-binding protein smubp-2 | GO:0003676 GO:0004386 GO:0005634 GO:0006351 GO:0021522 GO:0030424 GO:0030426 GO:0030529 GO:0042623 GO:0043022 GO:0043025 GO:0043167 GO:0048471 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_645.1_17675.t1 | 3 | 1 | ResIII | 175 | 228 | 2.2e-06 | 27.6 | 0.00071 | 0.2 | 11.4 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 1 | FtsK_SpoIIIE | 175 | 229 | 4.9e-06 | 26.1 | 0.00027 | 0.078 | 12.4 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 1 | AAA_30 | 187 | 233 | 5.7e-21 | 74.9 | 3.7e-08 | 1.1e-05 | 25.1 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 1 | T2SE | 187 | 230 | 4.1e-06 | 25.8 | 0.00047 | 0.13 | 11.0 |
| pfu_aug2.0_645.1_17675.t1 | 4 | 1 | AAA_11 | 188 | 230 | 0.0 | 219.7 | 1.3e-12 | 3.7e-10 | 39.7 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 1 | UvrD-helicase | 189 | 235 | 6.5e-06 | 25.6 | 6.7e-05 | 0.019 | 14.2 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 1 | PhoH | 190 | 233 | 2.6e-06 | 26.8 | 0.00051 | 0.15 | 11.3 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 1 | DEAD | 191 | 235 | 8.7e-09 | 35.0 | 0.0011 | 0.32 | 10.4 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 1 | AAA_16 | 193 | 269 | 1.3e-09 | 38.3 | 5.9e-06 | 0.0017 | 18.3 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 1 | AAA_19 | 195 | 230 | 2.3e-23 | 81.7 | 4.2e-09 | 1.2e-06 | 28.1 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 1 | ABC_tran | 195 | 229 | 4.3e-07 | 30.3 | 0.00058 | 0.16 | 12.2 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 1 | IstB_IS21 | 201 | 233 | 6.3e-08 | 32.2 | 0.00024 | 0.067 | 12.5 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 1 | AAA_22 | 203 | 230 | 3.0e-08 | 33.8 | 5.4e-05 | 0.015 | 15.3 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 1 | DUF2075 | 204 | 234 | 1.1e-07 | 31.1 | 0.00038 | 0.11 | 11.4 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 1 | AAA_25 | 204 | 233 | 2.5e-06 | 27.0 | 0.00049 | 0.14 | 11.5 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 1 | Zot | 205 | 233 | 2.8e-07 | 30.1 | 0.00072 | 0.2 | 11.0 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 1 | AAA_10 | 206 | 232 | 5.9e-07 | 29.2 | 0.003 | 0.86 | 8.9 |
| pfu_aug2.0_645.1_17675.t1 | 4 | 1 | Viral_helicase1 | 207 | 226 | 1.3e-08 | 34.6 | 0.00098 | 0.28 | 10.6 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 1 | AAA | 207 | 251 | 2.7e-08 | 34.0 | 4.1e-05 | 0.012 | 15.8 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 2 | ResIII | 256 | 370 | 2.2e-06 | 27.6 | 1.2e-06 | 0.00034 | 20.4 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 2 | FtsK_SpoIIIE | 256 | 310 | 4.9e-06 | 26.1 | 0.00078 | 0.22 | 10.9 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 2 | AAA_30 | 268 | 337 | 5.7e-21 | 74.9 | 1.3e-13 | 3.6e-11 | 42.9 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 2 | T2SE | 268 | 312 | 4.1e-06 | 25.8 | 0.00021 | 0.06 | 12.2 |
| pfu_aug2.0_645.1_17675.t1 | 4 | 2 | AAA_11 | 269 | 514 | 0.0 | 219.7 | 0.0 | 0.0 | 183.8 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 2 | UvrD-helicase | 270 | 389 | 6.5e-06 | 25.6 | 2.2e-06 | 0.00064 | 19.1 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 2 | PhoH | 271 | 313 | 2.6e-06 | 26.8 | 0.00017 | 0.05 | 12.8 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 2 | DEAD | 272 | 358 | 8.7e-09 | 35.0 | 3.1e-06 | 0.0009 | 18.7 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 2 | AAA_16 | 274 | 316 | 1.3e-09 | 38.3 | 1.1e-05 | 0.0032 | 17.4 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 2 | AAA_19 | 276 | 350 | 2.3e-23 | 81.7 | 1.4e-16 | 3.9e-14 | 52.1 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 2 | ABC_tran | 276 | 315 | 4.3e-07 | 30.3 | 0.00032 | 0.091 | 13.0 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 2 | IstB_IS21 | 282 | 337 | 6.3e-08 | 32.2 | 9.7e-06 | 0.0028 | 17.1 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 2 | AAA_22 | 284 | 306 | 3.0e-08 | 33.8 | 0.0003 | 0.086 | 12.9 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 2 | DUF2075 | 285 | 337 | 1.1e-07 | 31.1 | 0.00016 | 0.045 | 12.7 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 2 | AAA_25 | 285 | 315 | 2.5e-06 | 27.0 | 0.00038 | 0.11 | 11.9 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 2 | Zot | 286 | 342 | 2.8e-07 | 30.1 | 2.0e-05 | 0.0057 | 16.1 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 2 | AAA_10 | 287 | 456 | 5.9e-07 | 29.2 | 1.2e-05 | 0.0035 | 16.8 |
| pfu_aug2.0_645.1_17675.t1 | 4 | 2 | Viral_helicase1 | 288 | 319 | 1.3e-08 | 34.6 | 0.002 | 0.58 | 9.6 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 2 | AAA | 288 | 308 | 2.7e-08 | 34.0 | 7.2e-05 | 0.02 | 15.0 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 3 | DEAD | 433 | 483 | 8.7e-09 | 35.0 | 0.22 | 63.0 | 3.0 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 3 | DUF2075 | 457 | 486 | 1.1e-07 | 31.1 | 0.26 | 74.0 | 2.1 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 3 | AAA_30 | 468 | 510 | 5.7e-21 | 74.9 | 0.15 | 44.0 | 3.5 |
| pfu_aug2.0_645.1_17675.t1 | 4 | 3 | Viral_helicase1 | 471 | 509 | 1.3e-08 | 34.6 | 0.019 | 5.5 | 6.4 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 3 | Zot | 474 | 486 | 2.8e-07 | 30.1 | 6.4 | 1800.0 | -1.9 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 3 | PhoH | 497 | 540 | 2.6e-06 | 26.8 | 5.9 | 1700.0 | -2.0 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 3 | AAA_22 | 509 | 540 | 3.0e-08 | 33.8 | 4.7 | 1300.0 | -0.6 |
| pfu_aug2.0_645.1_17675.t1 | 1 | 1 | AAA_12 | 522 | 718 | 0.0 | 183.1 | 0.0 | 0.0 | 181.2 |
| pfu_aug2.0_645.1_17675.t1 | 4 | 3 | AAA_11 | 526 | 565 | 0.0 | 219.7 | 7.8 | 2200.0 | -2.1 |
| pfu_aug2.0_645.1_17675.t1 | 4 | 4 | Viral_helicase1 | 655 | 715 | 1.3e-08 | 34.6 | 0.017 | 4.8 | 6.6 |
| pfu_aug2.0_645.1_17675.t1 | 4 | 4 | AAA_11 | 675 | 823 | 0.0 | 219.7 | 0.24 | 69.0 | 2.8 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 3 | AAA_10 | 676 | 739 | 5.9e-07 | 29.2 | 7.1 | 2000.0 | -2.2 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 3 | ABC_tran | 765 | 866 | 4.3e-07 | 30.3 | 0.98 | 280.0 | 1.7 |
| pfu_aug2.0_645.1_17675.t1 | 1 | 1 | R3H | 821 | 880 | 9.4e-14 | 50.8 | 8.4e-16 | 2.4e-13 | 49.5 |
| pfu_aug2.0_645.1_17675.t1 | 3 | 3 | ResIII | 900 | 940 | 2.2e-06 | 27.6 | 4.1 | 1200.0 | -0.9 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 1 | zf-AN1 | 955 | 963 | 8.9e-09 | 35.0 | 3.7 | 1100.0 | -0.4 |
| pfu_aug2.0_645.1_17675.t1 | 2 | 2 | zf-AN1 | 1042 | 1083 | 8.9e-09 | 35.0 | 3.1e-11 | 8.9e-09 | 35.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_645.1_17675.t1 | gi|215539488|gb|AAI71648.1| | Ighmbp2l protein [Danio rerio] | 0.0 |
| pfu_aug2.0_645.1_17675.t1 | gi|120952590|ref|NP_001038365.1| | DNA-binding protein SMUBP-2 [Danio rerio] | 0.0 |
| pfu_aug2.0_645.1_17675.t1 | gi|632973111|ref|XP_007902991.1| | PREDICTED: DNA-binding protein SMUBP-2 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_645.1_17675.t1 | gi|597785082|ref|XP_007256031.1| | PREDICTED: DNA-binding protein SMUBP-2-like [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_645.1_17675.t1 | gi|591363826|ref|XP_007056815.1| | PREDICTED: DNA-binding protein SMUBP-2 [Chelonia mydas] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_645.1_17675.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17675.t1 atgaaaaataaaatttctacaggaaattcccatgttaatttcaagccgccgccatcttgttctccgtgtcaacaataggt cctctctgaaaaacttccagccaaggagttacagagaagaggtgtctgtctgttaaaacttcagattagcaactgtcgta ccgggctgtatggacggacattagtgacgtttgaaccttctggaaacagcactgagttaccatcgcacaatatcactcca ggtgacatagtgagtttgagttcgtcatcatcaacagatgccgctgatgtgattggttctggagttgtaactcgagtttc caagacaatcgttactgtcgcctttgatgacaaagaagatattttctccctgaatgatgaggggcgattccgactgacaa aactcacaaacgatgtaacttataaacgattgaaaagtgctttacacggtctacagaagcagacctcagcaccttgtaca agacttatctcggccttgtttggtgaaagggaactcactcctccatatcaaaaacaagatattcattttgttaatcagcg gttggatgaatcccagagagaggctgtgacctttgccctctcacagccagaagttgccgtagttcatggacccccaggga cgggtaaaactacaactatcattgagattattatgcaggctgtcaagcaaggaaataagaagcagacctcagcaccttgt acaagacttatctctgccttgtttggtgaaagggaactcactcctccgtatcaaaaacaagatattcattttgttaatca gcggttagatgaatcccagagagaggctgtgacctttgccctctcacagccagaagttgccgtagttcatgggcccccag ggacgggtaaaactacaactgtcattgagattattattcaggctgtcaaacaagggaataaagttttagcatgtgctccc tccaacattgcggtagacaatctggtagagagactgggtaagaacaggcagaaggtgataagactgggccatccagccag agtgctaccacacatacagaaatactccctggatgctgtactgtccagcagtgacgaaaccaagattgtagaggatgttc ggaaggacctggataaggcactgatatactccctggatgttgtaatggccagcagtgacgaaaccaagattgtggatgtt aggaaggacctggataaggcactggcagccctaaggaaaactagagataaaggagaaaaacaaaagttaagaggagacct taaatatctgaggaaagaacttgtgcagagggaggaagctgccataaaagaactgctaaatagggctgatgttgtcgtgg caacactgacaacagcttcattggaaggaccaattaaattccttgatgaagatcactttggagtggctgtaattgacgag tgttctcaggctgttgaagcagcatgttggattgccctacagagagctcctcgttgtatcttagctggtgaccacctgca gttacctcccaccatactcagtgttgaggctgccaaggatggactagagaaaacattgatggagaggataatagatctgt atgacaagaaggtagtacgtatgctgacgacacagtaccgcatgcatcgggccataatgacatggtcatcagaggtcctg tatcacggtaaactgaaggcagacccaagcgttgaaggccatcttcttagggatttacaagatgttacagactgtgaagt aacacaggaacctctgttattagtagacacagcaggttgtgagctgtatgagcttgacactccagaagaagtgtctaaag ggaatgaaggtgaagccgatatcattagtttccatgtaaagcaattaatagatctgggagtcggccaggaggacatcgct gttatcgctccatataacttacaggtagaattgttacgattaaggttgtccagtcaatatcccaaactagagattaaatc tgtggacggattccaggggagggaaaaagaagctgttctcatttccatggtcagaagtaaccctaaaggtgaggtgggtt ttctgtcagagaagcggcgaattaatgttgccgtaacacgagcacgtagacatttaatggtggtctgtgacagcgagact gtgagtcgtgatgaattcctgaaatctctgatcgagtacatgtcagaccatggagaggtgaaaacagcacaggaatatat agacaatggagtgctgaatggcacctctgaacgtcctgagcacttagctgacctactttctctgtctgtggagaggaaat ctgggtcagctagacagaaatcaaccaatcagaatcgagaatactcaaacaagaaatcagggaagctgaggagtaaacca gaagataaggagaacaagccagaatacaaacctaagactgaagaagaaaccaatgagagaataaaagaattccagggtta tctggacaattttgttgtagatgcgtcacaagactccatggaattccctgccactctgaactcacatgacagaatgcttg tgcatgagcttgctgagaaacttggtctagtccatatcagtaaaggtgtcgggaaggagagatttatagtggtgtccaaa ccaggagctgaggtcaaaaggtcagatggacaagaaggcaaggtcaaagggtcacaaggtcaggtgaaggaggaggtcaa aaagaaggacacacaacaaagttgtaaagatggcaacaaaggaaaaaataatactgacagtgacattaggactgtagaga aaatacatgtagaagaaaaggaaaactacggaactgtgctattagaggataaaaacagtgataaaataacatgtaaacac tgctcaaaacctgtgatcaaagccaactttcccctccatgaaattcattgtgcgcggcgtcaaaaagagactgcaaaatc tgcgaacgaagcaaaatcaggtcagcaagtgaaaagcaaaagaccaggaagtgccgctaaaaaagtaccgaatgctcatt cggatgttactgcaaaattaggtaaagttgatccagatgattttgatgccttgattgcgactgcacaaactatggatcag ggttgcgcgtttaaaaagtgtaaaacaaagacgataacgttaggtcacgtgtgcgagttttgtggtcggaggttctgtct atttcaccacacacccgaggtacatggatgtggcgacgcggctaagtccgcagcaagggcagcggtgattagggagggtg tgttatacagggggagtggtgtaccggataaactccctgaccccgataggaaagctaggcttcaaaaacgtatggatcag aaactatcagaaatgtcagcgaaaaggcagggaaagaaaaataaaaagtga |
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Protein
| Protein ID | pfu_aug2.0_645.1_17675.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17675.t1 MKNKISTGNSHVNFKPPPSCSPCQQXVLSEKLPAKELQRRGVCLLKLQISNCRTGLYGRTLVTFEPSGNSTELPSHNITP GDIVSLSSSSSTDAADVIGSGVVTRVSKTIVTVAFDDKEDIFSLNDEGRFRLTKLTNDVTYKRLKSALHGLQKQTSAPCT RLISALFGERELTPPYQKQDIHFVNQRLDESQREAVTFALSQPEVAVVHGPPGTGKTTTIIEIIMQAVKQGNKKQTSAPC TRLISALFGERELTPPYQKQDIHFVNQRLDESQREAVTFALSQPEVAVVHGPPGTGKTTTVIEIIIQAVKQGNKVLACAP SNIAVDNLVERLGKNRQKVIRLGHPARVLPHIQKYSLDAVLSSSDETKIVEDVRKDLDKALIYSLDVVMASSDETKIVDV RKDLDKALAALRKTRDKGEKQKLRGDLKYLRKELVQREEAAIKELLNRADVVVATLTTASLEGPIKFLDEDHFGVAVIDE CSQAVEAACWIALQRAPRCILAGDHLQLPPTILSVEAAKDGLEKTLMERIIDLYDKKVVRMLTTQYRMHRAIMTWSSEVL YHGKLKADPSVEGHLLRDLQDVTDCEVTQEPLLLVDTAGCELYELDTPEEVSKGNEGEADIISFHVKQLIDLGVGQEDIA VIAPYNLQVELLRLRLSSQYPKLEIKSVDGFQGREKEAVLISMVRSNPKGEVGFLSEKRRINVAVTRARRHLMVVCDSET VSRDEFLKSLIEYMSDHGEVKTAQEYIDNGVLNGTSERPEHLADLLSLSVERKSGSARQKSTNQNREYSNKKSGKLRSKP EDKENKPEYKPKTEEETNERIKEFQGYLDNFVVDASQDSMEFPATLNSHDRMLVHELAEKLGLVHISKGVGKERFIVVSK PGAEVKRSDGQEGKVKGSQGQVKEEVKKKDTQQSCKDGNKGKNNTDSDIRTVEKIHVEEKENYGTVLLEDKNSDKITCKH CSKPVIKANFPLHEIHCARRQKETAKSANEAKSGQQVKSKRPGSAAKKVPNAHSDVTAKLGKVDPDDFDALIATAQTMDQ GCAFKKCKTKTITLGHVCEFCGRRFCLFHHTPEVHGCGDAAKSAARAAVIREGVLYRGSGVPDKLPDPDRKARLQKRMDQ KLSEMSAKRQGKKNKK |
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