Gene
| Gene Model ID | pfu_aug2.0_645.1_17677 |
|---|---|
| Locus | scaffold645.1 : 79016 ... 84850 : + |
| To GenomeBrowser | scaffold645.1:79016..84850 |
| Genes list of scaffold | scaffold645.1 |
| Synonym | pfu_aug1.0_13252.1_03338 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_645.1_17677.t1 | 3 | 1 | zf-C3HC4_3 | 11 | 65 | 6.1e-07 | 29.0 | 4.5e-10 | 6.1e-07 | 29.0 |
| pfu_aug2.0_645.1_17677.t1 | 3 | 1 | zf-RING_2 | 12 | 61 | 9.0e-09 | 35.0 | 6.7e-12 | 9.0e-09 | 35.0 |
| pfu_aug2.0_645.1_17677.t1 | 2 | 1 | zf-RING_5 | 12 | 62 | 4.4e-07 | 29.5 | 3.2e-10 | 4.4e-07 | 29.5 |
| pfu_aug2.0_645.1_17677.t1 | 2 | 1 | zf-C3HC4 | 13 | 60 | 4.1e-07 | 29.5 | 3.0e-10 | 4.1e-07 | 29.5 |
| pfu_aug2.0_645.1_17677.t1 | 4 | 1 | zf-C3HC4_2 | 13 | 60 | 5.9e-07 | 29.3 | 4.4e-10 | 5.9e-07 | 29.3 |
| pfu_aug2.0_645.1_17677.t1 | 2 | 1 | zf-RING_UBOX | 13 | 58 | 1.1e-06 | 28.2 | 7.9e-10 | 1.1e-06 | 28.2 |
| pfu_aug2.0_645.1_17677.t1 | 4 | 2 | zf-C3HC4_2 | 94 | 121 | 5.9e-07 | 29.3 | 0.046 | 62.0 | 3.7 |
| pfu_aug2.0_645.1_17677.t1 | 3 | 2 | zf-C3HC4_3 | 100 | 131 | 6.1e-07 | 29.0 | 0.24 | 330.0 | 1.0 |
| pfu_aug2.0_645.1_17677.t1 | 2 | 2 | zf-C3HC4 | 102 | 121 | 4.1e-07 | 29.5 | 4.5 | 6000.0 | -3.0 |
| pfu_aug2.0_645.1_17677.t1 | 2 | 2 | zf-RING_5 | 102 | 129 | 4.4e-07 | 29.5 | 0.21 | 290.0 | 1.3 |
| pfu_aug2.0_645.1_17677.t1 | 4 | 3 | zf-C3HC4_2 | 102 | 129 | 5.9e-07 | 29.3 | 0.94 | 1300.0 | -0.5 |
| pfu_aug2.0_645.1_17677.t1 | 3 | 2 | zf-RING_2 | 120 | 129 | 9.0e-09 | 35.0 | 5.1 | 6900.0 | -3.1 |
| pfu_aug2.0_645.1_17677.t1 | 2 | 2 | zf-RING_UBOX | 126 | 132 | 1.1e-06 | 28.2 | 5.8 | 7900.0 | -3.4 |
| pfu_aug2.0_645.1_17677.t1 | 4 | 4 | zf-C3HC4_2 | 169 | 194 | 5.9e-07 | 29.3 | 4.0 | 5400.0 | -2.5 |
| pfu_aug2.0_645.1_17677.t1 | 3 | 3 | zf-RING_2 | 180 | 188 | 9.0e-09 | 35.0 | 2.0 | 2700.0 | -1.8 |
| pfu_aug2.0_645.1_17677.t1 | 3 | 3 | zf-C3HC4_3 | 610 | 621 | 6.1e-07 | 29.0 | 2.6 | 3600.0 | -2.3 |
Transcript
| Transcript ID | pfu_aug2.0_645.1_17677.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17677.t1 atggcggacatcaagtttctggatgatcttacggagtgcccgatatgttttaatcagtatcagcgaccacgatgtctacc gtgtcttcatacattttgtgaaaagtgtcttaatgaatatattgcgtcacagaagacggatccaacaacaaaggatagaa ccttcaattgcccagtatgccgccattttatcaacgccccttcatcagaattagacgaaactaaatgggcggaaaagttc ccactgaattaccttgtgctcacattgattgatcagaaatcgctccaggaaggtaaactttattgtaatccgtgtaagaa aaagtccaaaaacgaacaatcggtgtcgtggtgcatacagtgcaaaatttccctttgtaaagtttgtgaagaatttcata ctttacttccgatccttgaaaaccataagttagctccattaggagaaaagaaagatgaggcaatgttgctgtcctcggca cacattctatgcggaatccactccgataaacccatcgaaatgttttgtttggaccacaacgtcccttgctgttcaacatg tataatgattacacataggaaatgcgaaaacgtagatacccttgaaagtgtagctgaaaagtcaaagttgtcaaacgtta gagatgagcttgataaaggattttcagaacgactgaaattagttgaagaaagcttatgcaatgatgctacgaatctagat gcaatagatgaaaactgccaaatgataaagggtaggatagagaaagagagagatgctgcaatactacatttgagagcact ttccgacaaagcaatatctgacgtttgccaattccaagacaaacacaaagactcgatggcaggatcgttagaggtgaaaa aaggtagaaaagccaccattgaaaattgtcaaaaacttctgaaggcatcactagaacaatcatcggatgttcagtttttc ctagaatccagaaagcttagacagaaatttgacgaaatggaaaaggaagtacttgagctgcaaacaattcaaaattcaga agcttcatacgaaattcgaaaagaaataagcgctatcatagcgtatgattcatttggtgaattcaaacttggagattcca agacgagtgatgacgatcaaagtatacgtgtgtcatccgaaggaattatgccccaatcttctaattcagaagtagatgtc aagactcaagaagatgaatttcaaatcttaatgttgggcgatccgaaagaaattgatgtagaagcaagtaggtcaaactc ttctgttacaggatgcattttcctggaagatggtcgtttagtgtttactgatttcaaagggcccagttctaacgatggaa ttatcaaaatttatgaaacggacttggaaacattcagaattgtacctttcaaaggcagaccttggagtcttgcaagtctg agttcttcatacataatagtcgccattccacatagttccaaactggttgttttagacacatgggcattcagtatcaaata tactattgaatgtgatagaatgtatttcggtcttgctgttcaaaatcctttgaccgactcatcttcattgtccgatgatg accgtgaaaaatgcacgattttcgtatcatcaaagggagatatctgcctgtttaacttgaatggaaagcgtctaaaagac atttccatatccagcacctacataaggtacatcgtatacagtttggggagactgttttgcagtgttgatgataaagttgt atgtactgacgaagatggtcaagtcaaatttgaatttactgatgacagtttacataaagcaacgggaatagctgtcataa aagacggccatttcatggtttgtgactacggtctgaacggaggagttttaattgtcgattcaaaaggtttcaaaagaggc gtgttaataacaatggggaatacttcttatgtcgcatttaataaggagaaagacaagatgtgtgttatcaaaggtggacc aagtatcaacaatacagcatacatatacaatgtgaataaattgtaa |
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Protein
| Protein ID | pfu_aug2.0_645.1_17677.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17677.t1 MADIKFLDDLTECPICFNQYQRPRCLPCLHTFCEKCLNEYIASQKTDPTTKDRTFNCPVCRHFINAPSSELDETKWAEKF PLNYLVLTLIDQKSLQEGKLYCNPCKKKSKNEQSVSWCIQCKISLCKVCEEFHTLLPILENHKLAPLGEKKDEAMLLSSA HILCGIHSDKPIEMFCLDHNVPCCSTCIMITHRKCENVDTLESVAEKSKLSNVRDELDKGFSERLKLVEESLCNDATNLD AIDENCQMIKGRIEKERDAAILHLRALSDKAISDVCQFQDKHKDSMAGSLEVKKGRKATIENCQKLLKASLEQSSDVQFF LESRKLRQKFDEMEKEVLELQTIQNSEASYEIRKEISAIIAYDSFGEFKLGDSKTSDDDQSIRVSSEGIMPQSSNSEVDV KTQEDEFQILMLGDPKEIDVEASRSNSSVTGCIFLEDGRLVFTDFKGPSSNDGIIKIYETDLETFRIVPFKGRPWSLASL SSSYIIVAIPHSSKLVVLDTWAFSIKYTIECDRMYFGLAVQNPLTDSSSLSDDDREKCTIFVSSKGDICLFNLNGKRLKD ISISSTYIRYIVYSLGRLFCSVDDKVVCTDEDGQVKFEFTDDSLHKATGIAVIKDGHFMVCDYGLNGGVLIVDSKGFKRG VLITMGNTSYVAFNKEKDKMCVIKGGPSINNTAYIYNVNKL |
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