Gene
| Gene Model ID | pfu_aug2.0_645.1_17680 |
|---|---|
| Locus | scaffold645.1 : 131746 ... 136547 : + |
| To GenomeBrowser | scaffold645.1:131746..136547 |
| Genes list of scaffold | scaffold645.1 |
| Synonym | pfu_aug1.0_4896.1_67075 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_645.1_17680.t1 | 1 | 1 | RVT_1 | 174 | 301 | 1.7e-16 | 60.2 | 3.5e-20 | 2.6e-16 | 59.6 |
| pfu_aug2.0_645.1_17680.t1 | 1 | 1 | PTH2 | 318 | 340 | 3.5e-06 | 26.6 | 8.0e-10 | 5.9e-06 | 25.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_645.1_17680.t1 | gi|641653296|ref|XP_008178741.1| | PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Acyrthosiphon pisum] | 5.0e-26 |
| pfu_aug2.0_645.1_17680.t1 | gi|512912648|ref|XP_004927709.1| | 6.0e-24 | |
| pfu_aug2.0_645.1_17680.t1 | gi|512938527|ref|XP_004934026.1| | 1.0e-22 |
Transcript
| Transcript ID | pfu_aug2.0_645.1_17680.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17680.t1 atgactcaaatctacaaagatctggataaatcggctgattgtgatctgcgactcttctggaagcttgttaaacgtcaaaa accaagggcttcacgtatttatccggaaattgacgattcttccagtaatacacagtcgcatccggaaggtattgcaaaaa catttgctgaattctttcaaaacatctacagcacccgtaacgattcaaactctgatccggtattcgatcatcttatcgaa gaagagtatttaacaatgtgtaatgattgcgcaggtgaaagaactccacttcctggaggtctcgtatcagttgaggatct gaaacttattatatctcagcctaagcgtcgtaaagcgccgggagtagattgcattactaatgaacatatcatatttggcg ggaaaacagtacatatatgtttaaccgatctttttaatgcatgcattgaccttggtactattccgtcaaaatggaaagac agcctcattgtaccattatacaaagggggtaataaatcgaaacagtcatgtggaagttatagaccggtttctttactatc atccttattcaaaatgtttgaaaaactcattctgagtagaatgaagacatttgtatcgtatactagaccctttccacgac cacaacaacaaggcttccaagaaaacctgggctgcttaaccgctgcttttaatctacaagagacaatatattataatttg gaaaagggaagcaatttttacgaagcgtttctagattcatcgaaagcgtttgatacagtgtggaggaaagggttgatgta caaactgcataaacttggagtaaaagggaaaatatggtccataataaatgactgccatattgatactcgtagtgccgtcg tcgtaaatcagacacagtctgactggtttcccgttcttcagggcgatggattggttgcacgagagactggggagtataaa ctgatcatagttgtgcgtacagatctaaaaatgggtaaaggcaaagtggcagctcaggtcatattctttgataaattcga tttgataaagtga |
|
Protein
| Protein ID | pfu_aug2.0_645.1_17680.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17680.t1 MTQIYKDLDKSADCDLRLFWKLVKRQKPRASRIYPEIDDSSSNTQSHPEGIAKTFAEFFQNIYSTRNDSNSDPVFDHLIE EEYLTMCNDCAGERTPLPGGLVSVEDLKLIISQPKRRKAPGVDCITNEHIIFGGKTVHICLTDLFNACIDLGTIPSKWKD SLIVPLYKGGNKSKQSCGSYRPVSLLSSLFKMFEKLILSRMKTFVSYTRPFPRPQQQGFQENLGCLTAAFNLQETIYYNL EKGSNFYEAFLDSSKAFDTVWRKGLMYKLHKLGVKGKIWSIINDCHIDTRSAVVVNQTQSDWFPVLQGDGLVARETGEYK LIIVVRTDLKMGKGKVAAQVIFFDKFDLIK |
|