Gene
| Gene Model ID | pfu_aug2.0_645.1_17681 |
|---|---|
| Locus | scaffold645.1 : 139224 ... 141825 : - |
| To GenomeBrowser | scaffold645.1:139224..141825 |
| Genes list of scaffold | scaffold645.1 |
| Synonym | pfu_aug1.0_8923.1_31677 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rni-like protein | GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_645.1_17681.t1 | 2 | 1 | PTS_2-RNA | 17 | 97 | 9.0e-13 | 47.9 | 1.2e-15 | 2.3e-12 | 46.5 |
| pfu_aug2.0_645.1_17681.t1 | 6 | 1 | LRR_6 | 51 | 59 | 2.1e-08 | 33.3 | 5.7 | 11000.0 | -2.8 |
| pfu_aug2.0_645.1_17681.t1 | 3 | 1 | LRR_4 | 166 | 175 | 1.7e-07 | 30.6 | 0.23 | 440.0 | 0.6 |
| pfu_aug2.0_645.1_17681.t1 | 6 | 2 | LRR_6 | 167 | 179 | 2.1e-08 | 33.3 | 0.26 | 470.0 | 1.4 |
| pfu_aug2.0_645.1_17681.t1 | 6 | 3 | LRR_6 | 190 | 207 | 2.1e-08 | 33.3 | 0.073 | 140.0 | 3.0 |
| pfu_aug2.0_645.1_17681.t1 | 3 | 2 | LRR_4 | 191 | 228 | 1.7e-07 | 30.6 | 1.1e-06 | 0.002 | 17.7 |
| pfu_aug2.0_645.1_17681.t1 | 2 | 2 | PTS_2-RNA | 216 | 216 | 9.0e-13 | 47.9 | 1.1 | 2100.0 | -2.2 |
| pfu_aug2.0_645.1_17681.t1 | 6 | 4 | LRR_6 | 217 | 239 | 2.1e-08 | 33.3 | 0.00021 | 0.39 | 10.9 |
| pfu_aug2.0_645.1_17681.t1 | 6 | 5 | LRR_6 | 245 | 253 | 2.1e-08 | 33.3 | 0.41 | 750.0 | 0.7 |
| pfu_aug2.0_645.1_17681.t1 | 3 | 3 | LRR_4 | 245 | 283 | 1.7e-07 | 30.6 | 4.5e-05 | 0.084 | 12.5 |
| pfu_aug2.0_645.1_17681.t1 | 6 | 6 | LRR_6 | 269 | 288 | 2.1e-08 | 33.3 | 0.00034 | 0.63 | 10.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_645.1_17681.t1 | gi|524869521|ref|XP_005091553.1| | PREDICTED: uncharacterized protein LOC101851012 isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_645.1_17681.t1 | gi|524869523|ref|XP_005091554.1| | PREDICTED: uncharacterized protein LOC101851012 isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_645.1_17681.t1 | gi|390357285|ref|XP_003728973.1| | PREDICTED: F-box protein SKP2A [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_645.1_17681.t1 | gi|676448526|ref|XP_009051761.1| | hypothetical protein LOTGIDRAFT_153029, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_645.1_17681.t1 | gi|585690666|ref|XP_006821104.1| | PREDICTED: uncharacterized protein LOC102803698 [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_645.1_17681.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17681.t1 atgcctacaagtgaaagtaagagtgtgaatgataacggtgtaaagccggaggaggaggacagtaggctgtcaaagaggtt atgttacgtgttacgttatggtgctgtcaaagagggactggaggttctagagggaggttttgttgacattaagaagttaa tggagctccacataatgaggcataactcagaggaggaggtattagaggaggtgaataaatccatatcacacagaggtgct aaacgcttcgaaataaaaactgaaaaagacaaaacattggtcagggcagcattttgtaggaatttcgaaacaaacccgtg tcatgaggggtcgggtgtgttcaccttggtagaatcttgtctggaatacgtgtctacaaacttggaccagtatgacctag aagactttcctgatgaacatttaataagtaaaatgatccataagttgaagaggaagaagaaattaaacaacactgcttta agacagttattagtgcctgtgttagaacacttagatttagaaggaatgtatgtaacgcagggaacaataaaaactgtgta tcagtgctgtccccagctcagggtactcagccttaaagactgtggttatatagtaacagacacatcaatggaacagatac tcaagagactgaagaatttggaatctctgaatttgtgtgcatgtaaacatgtgacagacagaactatcaaggctttgata agacatactgtgaatttaaagcagctcaatctgagctggatccatagtatatcagaggcagctcttatagagctcatcac cagctgtcctaacctttcccatctagatatatacgatcataagattagtccgcaaggtatagaaactatgacggagatag cccagcaaacaaagttaactatcgtattaaaagggctaacagacaaggacgtggcacctgaaaacccttgcttaatgtta cctaattttggcaaagtatggtga |
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Protein
| Protein ID | pfu_aug2.0_645.1_17681.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17681.t1 MPTSESKSVNDNGVKPEEEDSRLSKRLCYVLRYGAVKEGLEVLEGGFVDIKKLMELHIMRHNSEEEVLEEVNKSISHRGA KRFEIKTEKDKTLVRAAFCRNFETNPCHEGSGVFTLVESCLEYVSTNLDQYDLEDFPDEHLISKMIHKLKRKKKLNNTAL RQLLVPVLEHLDLEGMYVTQGTIKTVYQCCPQLRVLSLKDCGYIVTDTSMEQILKRLKNLESLNLCACKHVTDRTIKALI RHTVNLKQLNLSWIHSISEAALIELITSCPNLSHLDIYDHKISPQGIETMTEIAQQTKLTIVLKGLTDKDVAPENPCLML PNFGKVW |
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