Gene
| Gene Model ID | pfu_aug2.0_645.1_17682 |
|---|---|
| Locus | scaffold645.1 : 144983 ... 153525 : - |
| To GenomeBrowser | scaffold645.1:144983..153525 |
| Genes list of scaffold | scaffold645.1 |
| Synonym | pfu_aug1.0_152274.1_35593 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_645.1_17682.t1 | 2 | 1 | Cadherin | 59 | 97 | 5.1e-12 | 45.8 | 1.8e-08 | 0.00014 | 22.0 |
| pfu_aug2.0_645.1_17682.t1 | 2 | 2 | Cadherin | 121 | 203 | 5.1e-12 | 45.8 | 1.4e-08 | 0.00011 | 22.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_645.1_17682.t1 | gi|524893638|ref|XP_005103328.1| | PREDICTED: protocadherin-9-like [Aplysia californica] | 1.0e-15 |
| pfu_aug2.0_645.1_17682.t1 | gi|524886365|ref|XP_005099779.1| | PREDICTED: protocadherin-11 X-linked-like [Aplysia californica] | 7.0e-15 |
| pfu_aug2.0_645.1_17682.t1 | gi|602653739|ref|XP_007432722.1| | PREDICTED: protocadherin Fat 1-like [Python bivittatus] | 1.0e-13 |
| pfu_aug2.0_645.1_17682.t1 | gi|524889817|ref|XP_005101460.1| | PREDICTED: protocadherin-11 Y-linked-like [Aplysia californica] | 2.0e-13 |
| pfu_aug2.0_645.1_17682.t1 | gi|554831862|ref|XP_005926490.1| | PREDICTED: protocadherin Fat 4-like isoform X2 [Haplochromis burtoni] | 3.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_645.1_17682.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17682.t1 atgcatatttcaggatatacttgtatccttatttccttactatgctttggaaagcaatctacagcgcaaccaaatgtgcg tacccatccaagtattatcctttatgattccgcaagtgacagccttaacttgcttaatataagagaagagttacctgcta acaccatggttggcatactcagcatcgaagatctaaacagggaattggaggatacctatttattacttgtcattgctaga gataaaggggtcccacggaggactgggacggccttagttcaggtcaacataaaagacgttaacgacaatatccctcaatt tacgagaccaaattttgattttaatattaccggcgatattgagagcgttacaacagtcgctcagcttactgcatacgaca aggatttgaatacggcgcctcttgtgtatgccttggtacaagtttacggggataattcttcgttccctttcgctgtactt tctgacggaacaatcgttacaacaactaatattaatttagatgaggccactgtgttttccttcagagtttctgtgagtga ttcaggtaatactctttcactttccagctatacgatggttaacatcaagtacaagcctggtggaatatcggagtga |
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Protein
| Protein ID | pfu_aug2.0_645.1_17682.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17682.t1 MHISGYTCILISLLCFGKQSTAQPNVRTHPSIILYDSASDSLNLLNIREELPANTMVGILSIEDLNRELEDTYLLLVIAR DKGVPRRTGTALVQVNIKDVNDNIPQFTRPNFDFNITGDIESVTTVAQLTAYDKDLNTAPLVYALVQVYGDNSSFPFAVL SDGTIVTTTNINLDEATVFSFRVSVSDSGNTLSLSSYTMVNIKYKPGGISE |
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