Gene
| Gene Model ID | pfu_aug2.0_645.1_17684 |
|---|---|
| Locus | scaffold645.1 : 195491 ... 205433 : - |
| To GenomeBrowser | scaffold645.1:195491..205433 |
| Genes list of scaffold | scaffold645.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_645.1_17684.t1 | 1 | 1 | VWA | 35 | 188 | 2.9e-26 | 92.2 | 1.0e-29 | 3.8e-26 | 91.8 |
| pfu_aug2.0_645.1_17684.t1 | 1 | 1 | VWA_2 | 35 | 184 | 3.3e-10 | 40.3 | 1.1e-13 | 4.2e-10 | 39.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_645.1_17684.t1 | gi|564242027|ref|XP_006277821.1| | PREDICTED: collagen alpha-1(XXII) chain-like, partial [Alligator mississippiensis] | 5.0e-21 |
| pfu_aug2.0_645.1_17684.t1 | gi|706127585|ref|XP_010198606.1| | PREDICTED: collagen alpha-1(XXII) chain-like, partial [Colius striatus] | 2.0e-20 |
| pfu_aug2.0_645.1_17684.t1 | gi|697041885|ref|XP_009583600.1| | PREDICTED: collagen alpha-1(XXII) chain-like, partial [Fulmarus glacialis] | 1.0e-19 |
| pfu_aug2.0_645.1_17684.t1 | gi|527254535|ref|XP_005145553.1| | PREDICTED: collagen alpha-1(XXII) chain [Melopsittacus undulatus] | 1.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_645.1_17684.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17684.t1 atgagaacattaacgtcagcattcacgcagacatcgacgacttctttcaaaggcaacatcaatggagagagcattaatga acaatgtggtaacaagccgtttgatatcgtgtttatgctggacggaagtgatagagttagtacggacgaattttcaaaac aacttcaactggcaagcgctcttgtagactccatggatcaaaacaaaacaagactaggcgttgtaaattatgggaaaaac gtaaatgatgtcataaatattaatgacatggaaaacaaaaagaagataaagacaacacttggaaatctcggaaaaattgg tggcgaaccacgccttggagacgccctatactacttaagatacgtagccctgaatgatcatgaaagcgaggttggtgttc gaaggattacaattctattttcgtccggtatcccaaatgacagaacacatattgtgaacgaggcaagggctgcacttgaa caggggataacgattatcgttgtcggtattggtaaacaggttgtagaagaagacttccatggaattgcaagctccccttc tcaatctttcacactgatatatagaggatggaacgaaaccaaaaaaataatggatgaactcggatgcatgatttgtcgag gggtatcagaatctgacactgatgtaaacgaggaagctgtgttacatagaggagctagtaagtaa |
|
Protein
| Protein ID | pfu_aug2.0_645.1_17684.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17684.t1 MRTLTSAFTQTSTTSFKGNINGESINEQCGNKPFDIVFMLDGSDRVSTDEFSKQLQLASALVDSMDQNKTRLGVVNYGKN VNDVININDMENKKKIKTTLGNLGKIGGEPRLGDALYYLRYVALNDHESEVGVRRITILFSSGIPNDRTHIVNEARAALE QGITIIVVGIGKQVVEEDFHGIASSPSQSFTLIYRGWNETKKIMDELGCMICRGVSESDTDVNEEAVLHRGASK |
|