Gene
| Gene Model ID | pfu_aug2.0_645.1_17685 |
|---|---|
| Locus | scaffold645.1 : 211914 ... 227541 : + |
| To GenomeBrowser | scaffold645.1:211914..227541 |
| Genes list of scaffold | scaffold645.1 |
| Synonym | pfu_aug1.0_11990.1_60974 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| vacuole membrane protein 1 | GO:0000407 GO:0005783 GO:0006887 GO:0007029 GO:0007030 GO:0010506 GO:0016020 GO:0016337 GO:0034329 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_645.1_17685.t1 | 1 | 1 | SAP | 12 | 39 | 1.1e-07 | 31.1 | 2.7e-11 | 2.0e-07 | 30.3 |
| pfu_aug2.0_645.1_17685.t1 | 1 | 1 | SNARE_assoc | 240 | 293 | 8.3e-08 | 32.4 | 4.9e-11 | 3.6e-07 | 30.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_645.1_17685.t1 | gi|759163576|ref|XP_011373355.1| | PREDICTED: vacuole membrane protein 1 isoform X2 [Pteropus vampyrus] | 0.0 |
| pfu_aug2.0_645.1_17685.t1 | gi|676433472|ref|XP_009046911.1| | hypothetical protein LOTGIDRAFT_172080 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_645.1_17685.t1 | gi|513216460|ref|XP_004946773.1| | PREDICTED: vacuole membrane protein 1 isoform X8 [Gallus gallus] | 0.0 |
| pfu_aug2.0_645.1_17685.t1 | gi|697823536|ref|XP_009632227.1| | PREDICTED: vacuole membrane protein 1 [Egretta garzetta] | 0.0 |
| pfu_aug2.0_645.1_17685.t1 | gi|50758350|ref|XP_415880.1| | PREDICTED: vacuole membrane protein 1 isoform X5 [Gallus gallus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_645.1_17685.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17685.t1 atgtataataacacttataaggatatagacatcgatgatttaaggaaaatgttgaaatccaaagggctgaagacaaaagg tcgtaagaaaactttgatacgtcgcttggcggaatatcagtcacatgatatggacaaaggagccaatcagtcgtcgtcta actcggaggtcaggaaacgtgcgggggatgtaaatggtcaagttaaagacaaagattccaaagatcaaagttcaacagat gagatgctggacatactacactcggagaggctggtcagggagggtatcgtactatggaggcgaccctttacaacgttaca gtacttttgtcaggaatcattagcacttgtctctgaaacagtagcaaaattagccaagaggaagaagactggacctcaca tagcggcggtgacgttagcagcatatgaatgtaacactacagacttccctgaaccaccctatcctactgagatagtatgt cccacagaagtcccagaagatagttctgttaatatttggagcattatcagtaaagttagatgggaggccattatgtgggg agcagggacggctataggagagctgcctccgtattttatggctcgcgcagccaggttatccggagccgaccttgacagtg acgagtttgaggagatagaggagcttatacatgaaaaaaaagttcatcccgatgaaatgagctttatggagaaagccaag ctaggtgtacataacctggtacagaaagtgggtttctttggtatccttgtttgtgcatcgataccaaatcccctatttga ccttgctgggataacctgcggtcatttcctggtgccattctggacattctttggtgcaacattaataggaaaagctgtta ttaaaatgcatatacagaaattcttcgtagtgttcatgttcagtaaacatcatgtagagcagttagttagtcttattgga aaaattccagaagtaggtagttcattacaaaagccgtttggagattatttagacgctcaacgtaagaaactccatcataa accagggacagatataccgtctgaaagcaatatacttgggtggatatttgagaagtttgtgattataatggtggtatact ttgtactgtctattgtcaactctatggcccagagttatcacaagagactatgtaaacaaacccacaagaaagcccagcat tag |
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Protein
| Protein ID | pfu_aug2.0_645.1_17685.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_645.1_17685.t1 MYNNTYKDIDIDDLRKMLKSKGLKTKGRKKTLIRRLAEYQSHDMDKGANQSSSNSEVRKRAGDVNGQVKDKDSKDQSSTD EMLDILHSERLVREGIVLWRRPFTTLQYFCQESLALVSETVAKLAKRKKTGPHIAAVTLAAYECNTTDFPEPPYPTEIVC PTEVPEDSSVNIWSIISKVRWEAIMWGAGTAIGELPPYFMARAARLSGADLDSDEFEEIEELIHEKKVHPDEMSFMEKAK LGVHNLVQKVGFFGILVCASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAVIKMHIQKFFVVFMFSKHHVEQLVSLIG KIPEVGSSLQKPFGDYLDAQRKKLHHKPGTDIPSESNILGWIFEKFVIIMVVYFVLSIVNSMAQSYHKRLCKQTHKKAQH |
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