Gene
| Gene Model ID | pfu_aug2.0_646.1_21015 |
|---|---|
| Locus | scaffold646.1 : 68678 ... 108815 : - |
| To GenomeBrowser | scaffold646.1:68678..108815 |
| Genes list of scaffold | scaffold646.1 |
| Synonym | pfu_aug1.0_24950.1_69672 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerase iii subunit rpc1 | GO:0001056 GO:0003677 GO:0003682 GO:0005666 GO:0006351 GO:0008270 GO:0016020 GO:0032549 GO:0032728 GO:0045087 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_646.1_21015.t1 | 2 | 1 | RNA_pol_Rpb1_1 | 13 | 308 | 0.0 | 251.5 | 0.0 | 0.0 | 235.1 |
| pfu_aug2.0_646.1_21015.t1 | 2 | 2 | RNA_pol_Rpb1_1 | 308 | 329 | 0.0 | 251.5 | 3.5e-08 | 0.0001 | 21.6 |
| pfu_aug2.0_646.1_21015.t1 | 1 | 1 | RNA_pol_Rpb1_2 | 331 | 497 | 0.0 | 223.3 | 0.0 | 0.0 | 221.8 |
| pfu_aug2.0_646.1_21015.t1 | 1 | 1 | RNA_pol_Rpb1_3 | 501 | 664 | 4.5e-36 | 123.9 | 4.4e-39 | 1.3e-35 | 122.4 |
| pfu_aug2.0_646.1_21015.t1 | 2 | 1 | RNA_pol_Rpb1_4 | 665 | 711 | 3.6e-16 | 58.8 | 1.2e-18 | 3.6e-15 | 55.6 |
| pfu_aug2.0_646.1_21015.t1 | 1 | 1 | RNA_pol_Rpb1_5 | 718 | 1196 | 0.0 | 333.6 | 0.0 | 0.0 | 332.7 |
| pfu_aug2.0_646.1_21015.t1 | 2 | 2 | RNA_pol_Rpb1_4 | 1095 | 1124 | 3.6e-16 | 58.8 | 0.41 | 1200.0 | -0.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_646.1_21015.t1 | gi|597747010|ref|XP_007235503.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_646.1_21015.t1 | gi|170039594|ref|XP_001847615.1| | conserved hypothetical protein [Culex quinquefasciatus] | 0.0 |
| pfu_aug2.0_646.1_21015.t1 | gi|157130170|ref|XP_001655623.1| | AAEL011692-PA [Aedes aegypti] | 0.0 |
| pfu_aug2.0_646.1_21015.t1 | gi|157126795|ref|XP_001660950.1| | AAEL010617-PA [Aedes aegypti] | 0.0 |
| pfu_aug2.0_646.1_21015.t1 | gi|194758651|ref|XP_001961575.1| | GF14868 [Drosophila ananassae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_646.1_21015.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_646.1_21015.t1 atggtgaaagaacagttcagagaatctgatgttgcgaaaaagataagtcatgtgacatttggcttgttgactgcccatga catgcagcagctgtcccaccttcatgtggtcagtaaaaatctgtacagtcaagatggcagtcataaaccagtacagtatg gaccactcgatcataaaatgggtacaagtgaaaaggataacctttgtgagacatgtggaaagggattggctgaatgtaca ggtcattacggatatattgaccttgaactgccttgttttcacatcggctatttcagggccacgatacaggttctacaaat gatctgcaaggactgcagtcgaattctcctaactcctgatcagagaaagactttcctagacaatgtgaaaactccgctta cttacctacagagaaaagtactgaaaaagaaaatctacgacaagtgcagaaaaatatcagtatgtccctcatgcagagcg tacaatggtatggtgaagaaatgtggccttctgaaaataatacatgatagatacaagtcaacaaggaaaggaaacgaagc tatgattgcagaatttatgggctcgttcaccgatgcattggaacacaacaaagatttagaacctctcctaagcaaaactc aggaagccctcaatccaattattgtacaaaagttgttcaaaagaatagatgaagaggacataccgttgctgttgatgaat tgtgacattggccatccctccgaccttatacttacccgtatactggtgccacctatatgtatcagaccctcagtggtgtc cgaccttaagtctggaacgaatgaagacgatataacgatgaagatgacagagatactttttctaaatgatgtaatacaga agcacaaggccactggtgccaaaatgtccatgattatgccaaagaaaagtactagaggatttgtgcaacgactgaaagga aaacagggtcgtttccgtggcaacttgtcaggaaaacgtgtcgatttctcaggaagaacagtcatatctccggatcccaa catgagaatagatcaagtagctgttcctgtccatgttgccaaagtgctaacataccctgagaaagtgaacaaagctaaca taaaactgatgagaaagctggtaataaatggctgtgacacacatcctggtgctaactttatccaacagagggataacaat attaaaagatttctgagatacggaaatagagagaagattgcccgtgaacttaagcttggtgacgtggtagaaagacacat gatagatggagatatagtgctatttaacagacagccatcccttcataaacttagtatagaagctttctttgccaaagtaa tgccacacaggaccttcagatttaacgagtgttgctgtaatccatttaacgctgattttgacggtgacgagatgaatctt catctaccacagacagaggaagccaaagcagaagctatcatacttatggggtctaagtcaaatatcatcactccacgtaa tggggaaccacttattgcagcaatccaagatttcatcactggtggttacctgattactcagaaggatgttttcctggata gggcgagggcttgtcaactcatatctgccatgttatcacaaagggacactgccatgaaaatcgacctacctccccctgca attttcaagcctgtgaagctgtggacagggaaacagatatttagtgtacttttaaggccgaataagaaagatcctgtcat ggtgaatctgaggacgaggggaaaaaactactccagcaatgaagacttgtgtgtcaatgactcatttgttgtggttcgta acagtgagttactgtgtggagccatggacaaaggcacgttaggttcgggatccaagaataacatattctacattatactg agagactttggagagcagaaagcagctgatacactgtccagactggcaaggctttgtcctgcttatctgagatcctttat caatatatctcagatgatagcatgtgtaggacaacaggctatcagtggtaaaaggactcctaatggatttgaggacagag cattgcctcactttgaaaaattctctaaggatcccgcggctcgagggtttgttgagaacagtttctacagcggcttaact cccacagagttcttcttccacaccatggcagggagagaaggtttagtggacactgccgttaaaaccgcagagacagggta catgcagagaagactggtcaagtcacttgaagatctgtgttcacactatgatctgactgtccgttcgtccaccaatgaca tcgtacagtttacgtatggcggtgatagcttagatccagcctctatggaagggaaggacagacctatagactttcagaga gtctttgatcatgtcaaggctaacatcaggatagactgtcatgatgaaccgtccctcagcgggccagagctagacaagat tgtgtatgagaaattagagactaaaacttataatcaacttagccaggagttcaagggagatctgaaggagtttattgatg gcatttcacagaaaataacaaaaacaagggatagatttggagtacacggtaaaatcaggcaacatattcctccagtgctg tttgagttggacagggttacagaaacacaagtggagaagtttttaggagtctgtagagataagttcatgaggtcacaaat agaacctggcacggcagttggagcagtgtgtgcacagagtattggagagccaggaacacagatgacgctgaaaactttcc actttgctggtgtagcttccatgaacattacacagggtgtgcccaggatcaaagaaatcatcaatgcctccaaggttatt agtacacctataattacggcacagttaatgaacagttctgacgcagagtatgcaagagttgtcaagggacgtattgagaa aacaactcttggtgaggtgtcggagtatattgaggaagttttcctaccagacgactgctttatactcgtcaaactggatc aggacagaatcaaacttctaaagcttgaagtgaatgttgacagcatcaaggaatctatctgcaaaagtaaattacgagtc aaacctcaagatatacaagttcacagtgaggcagtgttgactgtacatcccagagagacgtctaaaagttccttgtatta tgttttacaaactctgaagaaagagcttggtggtgtcatgattaagggtgttcagaatgtcagcagggctgttatacacg tagatgagaagaaaggaaatagttacaagcttctggtagagggagacaacttgctggcggtaatggcaacaccaggtata aagggaacccatgctttctcaaacaatacatttgcaatggagaagactctcggcatcgaagcagcacgtacgaccatcat aaacgaagtagtgtatactatgtctagtcatggaatgagcatcgatattcgtcatgtgatgttactggctgacctcatga cctttaagggtgaagttcttggaattacaagatttggtttggcaaagatgaaagagagtgttctcatgttagcttcattt gagaaaactgctgaccatttgtttgaagcagcttaccatggccagagagatacaatcaatggtgtcagcgaatgtataat tatgggcattcccatgggcatcgggacagggctgttcaagctactacacaacgggattcatattttagcggagttagcgc gttatagactgcgctaa |
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Protein
| Protein ID | pfu_aug2.0_646.1_21015.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_646.1_21015.t1 MVKEQFRESDVAKKISHVTFGLLTAHDMQQLSHLHVVSKNLYSQDGSHKPVQYGPLDHKMGTSEKDNLCETCGKGLAECT GHYGYIDLELPCFHIGYFRATIQVLQMICKDCSRILLTPDQRKTFLDNVKTPLTYLQRKVLKKKIYDKCRKISVCPSCRA YNGMVKKCGLLKIIHDRYKSTRKGNEAMIAEFMGSFTDALEHNKDLEPLLSKTQEALNPIIVQKLFKRIDEEDIPLLLMN CDIGHPSDLILTRILVPPICIRPSVVSDLKSGTNEDDITMKMTEILFLNDVIQKHKATGAKMSMIMPKKSTRGFVQRLKG KQGRFRGNLSGKRVDFSGRTVISPDPNMRIDQVAVPVHVAKVLTYPEKVNKANIKLMRKLVINGCDTHPGANFIQQRDNN IKRFLRYGNREKIARELKLGDVVERHMIDGDIVLFNRQPSLHKLSIEAFFAKVMPHRTFRFNECCCNPFNADFDGDEMNL HLPQTEEAKAEAIILMGSKSNIITPRNGEPLIAAIQDFITGGYLITQKDVFLDRARACQLISAMLSQRDTAMKIDLPPPA IFKPVKLWTGKQIFSVLLRPNKKDPVMVNLRTRGKNYSSNEDLCVNDSFVVVRNSELLCGAMDKGTLGSGSKNNIFYIIL RDFGEQKAADTLSRLARLCPAYLRSFINISQMIACVGQQAISGKRTPNGFEDRALPHFEKFSKDPAARGFVENSFYSGLT PTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDLTVRSSTNDIVQFTYGGDSLDPASMEGKDRPIDFQR VFDHVKANIRIDCHDEPSLSGPELDKIVYEKLETKTYNQLSQEFKGDLKEFIDGISQKITKTRDRFGVHGKIRQHIPPVL FELDRVTETQVEKFLGVCRDKFMRSQIEPGTAVGAVCAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINASKVI STPIITAQLMNSSDAEYARVVKGRIEKTTLGEVSEYIEEVFLPDDCFILVKLDQDRIKLLKLEVNVDSIKESICKSKLRV KPQDIQVHSEAVLTVHPRETSKSSLYYVLQTLKKELGGVMIKGVQNVSRAVIHVDEKKGNSYKLLVEGDNLLAVMATPGI KGTHAFSNNTFAMEKTLGIEAARTTIINEVVYTMSSHGMSIDIRHVMLLADLMTFKGEVLGITRFGLAKMKESVLMLASF EKTADHLFEAAYHGQRDTINGVSECIIMGIPMGIGTGLFKLLHNGIHILAELARYRLR |
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