Gene
| Gene Model ID | pfu_aug2.0_646.1_21016 |
|---|---|
| Locus | scaffold646.1 : 109346 ... 116807 : + |
| To GenomeBrowser | scaffold646.1:109346..116807 |
| Genes list of scaffold | scaffold646.1 |
| Synonym | pfu_aug1.0_2524.1_08336 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ribosome biogenesis protein tsr3 homolog | GO:0006364 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_646.1_21016.t1 | 2 | 1 | RLI | 4 | 8 | 2.3e-14 | 52.6 | 1.5 | 5500.0 | -3.0 |
| pfu_aug2.0_646.1_21016.t1 | 2 | 2 | RLI | 69 | 101 | 2.3e-14 | 52.6 | 6.2e-18 | 2.3e-14 | 52.6 |
| pfu_aug2.0_646.1_21016.t1 | 1 | 1 | DUF367 | 106 | 232 | 0.0 | 179.0 | 0.0 | 0.0 | 178.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_646.1_21016.t1 | gi|551503515|ref|XP_005803297.1| | PREDICTED: ribosome biogenesis protein TSR3 homolog [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_646.1_21016.t1 | gi|410896027|ref|XP_003961501.1| | PREDICTED: ribosome biogenesis protein TSR3 homolog [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_646.1_21016.t1 | gi|657594592|ref|XP_008301917.1| | PREDICTED: ribosome biogenesis protein TSR3 homolog [Stegastes partitus] | 0.0 |
| pfu_aug2.0_646.1_21016.t1 | gi|390348262|ref|XP_791704.3| | 0.0 | |
| pfu_aug2.0_646.1_21016.t1 | gi|335284824|ref|XP_003124772.2| | PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Sus scrofa] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_646.1_21016.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_646.1_21016.t1 atgcacttcaaccctgataagtgcgaggtcatacatattaccaggaaaaggaacaagttagaactgccatactacatcca tggcaaggcactcaactccaccaagagtgcaaagtatctcggagtcaccatttcggncagaagattcatatctggaccaa aggatgaagaggtgccgtcatgggcagctgagaaatttccatgtcacttggccatgtgggacctcggacattgtgacccc aaaaaatgtagcggcagaaagctggctcgtcttggctatgtcagaaatatgaagctgcaacagagattcaatggcttgat tctgtcccctatgggaaccaagtgtgtctcacccgcagacagggaaatagtggaacagcatggcgtggctgttgttgact gctcatgggcgaggctggaggacactccctttagtaggataaggggaggcaaccctcggcttttaccatttctcgtggcc accaatcctgtgaactatggcaaaccttgtacgttatcctgtgtcgaggcttatgcagcagcattgtacataactggata caaggaacttggagagatccttttaaagaagttcaagtggggacataatttctttgagctgaatcaggaaattttagaca aatatacaggatgcaaagacagtgcagaagtcgtagcaacgcagcaggagtatttaacccagacttctaaaagacgagat gaggaagacagttatgatatgactgatattgatttggatattgatcatttcaatccaaaccatcgagttggagagttacc cccttctgaatcgtctgaggaagaagattcagatgatgattgtgaaaatgaagaagtttgtgaagaaaactacaatgaag atattgattgtgaagatggaaatgacagagatagtgcctgtgatagtgaagataataataaacatagtgatggtgaagat acagagactagtagtaaaaataatgaagatacatgtagtaatactgaagataaggaaagaagaaatcgtgaaaataatga ggacaacaaaggaagaagcaatacggaaatttatgatccaagtgatattttgacagacaaagtaggtactagtcaagcaa gtaacagtccagagcagccgcaaaaatctctggttgacagcatcacgaacgaaatgttgacagctgttatacttaatgat gataaaaaatga |
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Protein
| Protein ID | pfu_aug2.0_646.1_21016.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_646.1_21016.t1 MHFNPDKCEVIHITRKRNKLELPYYIHGKALNSTKSAKYLGVTISXRRFISGPKDEEVPSWAAEKFPCHLAMWDLGHCDP KKCSGRKLARLGYVRNMKLQQRFNGLILSPMGTKCVSPADREIVEQHGVAVVDCSWARLEDTPFSRIRGGNPRLLPFLVA TNPVNYGKPCTLSCVEAYAAALYITGYKELGEILLKKFKWGHNFFELNQEILDKYTGCKDSAEVVATQQEYLTQTSKRRD EEDSYDMTDIDLDIDHFNPNHRVGELPPSESSEEEDSDDDCENEEVCEENYNEDIDCEDGNDRDSACDSEDNNKHSDGED TETSSKNNEDTCSNTEDKERRNRENNEDNKGRSNTEIYDPSDILTDKVGTSQASNSPEQPQKSLVDSITNEMLTAVILND DKK |
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