Gene
| Gene Model ID | pfu_aug2.0_646.1_21019 |
|---|---|
| Locus | scaffold646.1 : 187960 ... 198849 : - |
| To GenomeBrowser | scaffold646.1:187960..198849 |
| Genes list of scaffold | scaffold646.1 |
| Synonym | pfu_aug1.0_3481.1_16116 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| splicing factor 1-like isoform x3 | GO:0003723 GO:0008270 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_646.1_21019.t1 | 1 | 1 | KH_1 | 75 | 146 | 4.5e-09 | 35.8 | 3.3e-12 | 9.7e-09 | 34.7 |
| pfu_aug2.0_646.1_21019.t1 | 1 | 1 | KH_3 | 76 | 103 | 7.6e-07 | 28.6 | 8.7e-10 | 2.6e-06 | 26.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_646.1_21019.t1 | gi|676428339|ref|XP_009045243.1| | hypothetical protein LOTGIDRAFT_211871 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_646.1_21019.t1 | gi|524892815|ref|XP_005102932.1| | PREDICTED: splicing factor 1-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_646.1_21019.t1 | gi|524892811|ref|XP_005102930.1| | PREDICTED: splicing factor 1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_646.1_21019.t1 | gi|585676581|ref|XP_006818990.1| | PREDICTED: splicing factor 1-like isoform X4 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_646.1_21019.t1 | gi|585676577|ref|XP_006818989.1| | PREDICTED: splicing factor 1-like isoform X3 [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_646.1_21019.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_646.1_21019.t1 atgtacagatcgccatctccggagcccatatacaataacgagggtaaaaggttaaacacacgggaatatcggactcggaa gaggttggaagaggatcgacacagattggtacaggaagccatggagataaacacagactacaaaccacctgctgattaca aacctccagtagtgagagtaagtgacaaagtaatgatcccccaggatgaccatccagaaatcaactttgtaggcttactt ataggaccacgtgggaacacattgaagaatctagaaaaagatactggagccaaaataattattagaggaaaaggatctgt gaaagaggggaaaattggacgtaaagacggacaacccttgccaggagaggatgaacctttacacgcatacgttacagcaa acaacccagagaatgtgaagaaggccgttgaaaagatcaaagacatcataacacaaggaatcgaagtaccagagggccag aacgatctacgaagacagcagctgagggaattggccttactcaacggcacattgagagaaaacgatggtttagctaaact gaagcagcttcaacaagctcagactataattaccaacaccatactgtgtactgtatgtggaggtacaggccatttgtcac aggattgtaaatctaaaagacctggagatacactgaagaactttactcctgagacacttagaacttctcaagcagacaaa gcaaagatggatagtgagtatatgtcattaatggcagagttaggtgagggacctccaccacccaaaagccagaccacaac ctccccacctaatccaccaatcagacaggagacgaggttccaggcacctatgaatcatccacctcccaatcctatgggca ttaatcctccatggcaacaaggtccaggtccaatgcagcgacctccccctccccaggtggtctccaacatcagtcttagc agccccgttcagcccccgtcacagcaaatacaggccccccagcccccctcaacctacaccagtcagcccagtatgacatc gtctatgcagcagccgggacagatgccnaatgccccctcaggtgccagttcctgtggcgccgccctcacagttcgtttcg tcggcagcgccagtacagccgccatggcagacttctatgaattctcaagctccagcttcttcgggggctggatgcctcct ccatcatcacttttatcaccaccccctcccccaccccccagtagccagcctccttcatcatggatgcagattcctcaggg tgttggtgtgccacctcctccacctgtaacatcatcagctgcaatgccatggcaacaagccccgcctccaccacctgcct cattacctccatggcaacaagctccaccccccgtacagccacctgtaccaaatccagtggccccacctcctcctccaccc agccaaccagggtacaatcctatgtcagccccacctcccccaccgcctggtggatatgacatgtcaggaatgggaggggt caatcctttactggtggcacccccaccacctcccccaaattaa |
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Protein
| Protein ID | pfu_aug2.0_646.1_21019.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_646.1_21019.t1 MYRSPSPEPIYNNEGKRLNTREYRTRKRLEEDRHRLVQEAMEINTDYKPPADYKPPVVRVSDKVMIPQDDHPEINFVGLL IGPRGNTLKNLEKDTGAKIIIRGKGSVKEGKIGRKDGQPLPGEDEPLHAYVTANNPENVKKAVEKIKDIITQGIEVPEGQ NDLRRQQLRELALLNGTLRENDGLAKLKQLQQAQTIITNTILCTVCGGTGHLSQDCKSKRPGDTLKNFTPETLRTSQADK AKMDSEYMSLMAELGEGPPPPKSQTTTSPPNPPIRQETRFQAPMNHPPPNPMGINPPWQQGPGPMQRPPPPQVVSNISLS SPVQPPSQQIQAPQPPSTYTSQPSMTSSMQQPGQMXNAPSGASSCGAALTVRFVGSASTAAMADFYEFSSSSFFGGWMPP PSSLLSPPPPPPPSSQPPSSWMQIPQGVGVPPPPPVTSSAAMPWQQAPPPPPASLPPWQQAPPPVQPPVPNPVAPPPPPP SQPGYNPMSAPPPPPPGGYDMSGMGGVNPLLVAPPPPPPN |
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