Gene
| Gene Model ID | pfu_aug2.0_646.1_21021 |
|---|---|
| Locus | scaffold646.1 : 248443 ... 264941 : - |
| To GenomeBrowser | scaffold646.1:248443..264941 |
| Genes list of scaffold | scaffold646.1 |
| Synonym | pfu_aug1.0_5384.1_01979 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_646.1_21021.t1 | 4 | 1 | Rad17 | 51 | 64 | 2.7e-10 | 39.5 | 2.4 | 1700.0 | -2.7 |
| pfu_aug2.0_646.1_21021.t1 | 4 | 2 | Rad17 | 108 | 173 | 2.7e-10 | 39.5 | 4.0e-08 | 2.8e-05 | 22.9 |
| pfu_aug2.0_646.1_21021.t1 | 1 | 1 | RuvB_N | 127 | 202 | 2.5e-07 | 29.9 | 6.8e-10 | 4.8e-07 | 29.0 |
| pfu_aug2.0_646.1_21021.t1 | 1 | 1 | AAA_14 | 127 | 209 | 3.8e-07 | 30.0 | 2.1e-09 | 1.5e-06 | 28.1 |
| pfu_aug2.0_646.1_21021.t1 | 1 | 1 | AAA_19 | 127 | 183 | 1.0e-05 | 25.1 | 3.3e-08 | 2.4e-05 | 24.0 |
| pfu_aug2.0_646.1_21021.t1 | 2 | 1 | AAA_17 | 129 | 161 | 1.4e-06 | 29.1 | 4.2e-08 | 3.0e-05 | 24.8 |
| pfu_aug2.0_646.1_21021.t1 | 3 | 1 | AAA | 130 | 218 | 3.5e-14 | 53.1 | 9.5e-16 | 6.7e-13 | 48.9 |
| pfu_aug2.0_646.1_21021.t1 | 2 | 1 | AAA_5 | 130 | 224 | 3.4e-09 | 36.5 | 1.8e-11 | 1.3e-08 | 34.6 |
| pfu_aug2.0_646.1_21021.t1 | 2 | 1 | AAA_18 | 130 | 172 | 8.8e-06 | 26.0 | 7.0e-08 | 4.9e-05 | 23.6 |
| pfu_aug2.0_646.1_21021.t1 | 4 | 3 | Rad17 | 284 | 311 | 2.7e-10 | 39.5 | 1.0e-05 | 0.0071 | 15.0 |
| pfu_aug2.0_646.1_21021.t1 | 3 | 2 | AAA | 318 | 318 | 3.5e-14 | 53.1 | 5.9 | 4100.0 | -2.2 |
| pfu_aug2.0_646.1_21021.t1 | 4 | 4 | Rad17 | 375 | 422 | 2.7e-10 | 39.5 | 0.77 | 540.0 | -1.1 |
| pfu_aug2.0_646.1_21021.t1 | 2 | 2 | AAA_5 | 437 | 452 | 3.4e-09 | 36.5 | 7.5 | 5300.0 | -3.0 |
| pfu_aug2.0_646.1_21021.t1 | 3 | 3 | AAA | 439 | 468 | 3.5e-14 | 53.1 | 0.92 | 650.0 | 0.4 |
| pfu_aug2.0_646.1_21021.t1 | 2 | 2 | AAA_17 | 523 | 596 | 1.4e-06 | 29.1 | 0.93 | 650.0 | 1.1 |
| pfu_aug2.0_646.1_21021.t1 | 2 | 2 | AAA_18 | 591 | 603 | 8.8e-06 | 26.0 | 5.2 | 3700.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_646.1_21021.t1 | gi|676437110|ref|XP_009048097.1| | hypothetical protein LOTGIDRAFT_230720 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_646.1_21021.t1 | gi|524890187|ref|XP_005101642.1| | PREDICTED: chromosome transmission fidelity protein 18 homolog [Aplysia californica] | 0.0 |
| pfu_aug2.0_646.1_21021.t1 | gi|597752696|ref|XP_007238199.1| | PREDICTED: chromosome transmission fidelity protein 18 homolog [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_646.1_21021.t1 | gi|602663765|ref|XP_007437508.1| | PREDICTED: chromosome transmission fidelity protein 18 homolog [Python bivittatus] | 0.0 |
| pfu_aug2.0_646.1_21021.t1 | gi|554837765|ref|XP_005929346.1| | PREDICTED: chromosome transmission fidelity protein 18 homolog isoform X1 [Haplochromis burtoni] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_646.1_21021.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_646.1_21021.t1 aggaaagaaaatcttacatctgaagcacggaaacttgcacaattagaagaggaagcagagcttcttaccaacaatttgaa ggaaaaagaaaatgaccgcatcggaaatgttccagttgatgacgatgatcattcccacgtgaaaaaactgttatgggtag aaaaatatgctcctgcgaagtacttggacttactaagtgaagagtctatcaacagaattttgctacattggctgaagttg tgggacttcttagtttttggaaaagagaaaaaagtgagaaaaaaagaaaaagaagccgagaaaaagggtaataaagactt taagaagaagaaatttccggaagtgactgatgaattggacaaacaaaacagacctgttcagaagatagtcttactgaatg gaccgccgggtttgggcaaaaccacactggcacatatagtggcaaaacattgtggatataacgtggtggaaattaatgcc agtgatgacagaagtgccgatatttttaagacaaagttagaagcagctacacagatgagagcggtgctcggtgccgatcc caaaccaaactgcttagttatagatgaaatagacggagcaccccagactgctataaatgttttgatgagttatataagga gacaagacgagcccactgccaagaagaaaaagaaagacgaggcattattactacgtcctgtgatatgcatatgcaatgat cagtatactccatctttaagagttttacgccagaatgccttagttctgaattttccaccaacagaacttgccaaattggc tagtaggttgtctgaggtggtaaagacagaagatatgagagttgacatgaacactctgatggtgctatgtgctaaaacag agaatgacatacggtcttgtataaacactctacagttttgtaaaactgcccacaaggagctgtcagtgagattgttagac agaatgaatgtagggcagaaagatgccaataaaaatctgttctctgtgtggtatgaaatcttttcaaagcccaagccaaa aagaaggcctgtcattggagagagtgtggagccaggaaggaacagtaattctttagaatcaagagctgacaatatcttac atatggtacaaggatctggagaatactcaaaacttaccttgggaatatttgaaaactttcttcagtgcaaagtcaaagat ccaaaattagatggaatgaagtcttcattggattggctatgcttcacagatcagatcaacaagtttatgggtactttaca agactacagactgatgccttacctaccttattcagccgttaacttccatcttatatatgcggcaaatcaaccccacaaaa tacagtacccgtacactgactatgaggcctttaccaagcagacaaagttagagaatctagtgagtaccatgatgtcagac atgacggcgtacgtacagaagttcatcagtaagatagcgattgtcatggacctactacctccgctaatggacatcataca gcctacattccgacccgtgaatactcagctttacagtaccagagagaaagaagagttatctaacttggtgaggactatga tagcctataacatgacgtaccatcaggagaaatcaccagagggacagtatctctacgtactcgatccaaatatggaagaa gtgataagattttctggtatgaagcaacataaacaactgacttatgcagttaaacagctcatcagtagagagattgaact tgaaagacttcgaagaaaagaaaacagagatgtgaaaaacacatcgaaggaaaaaaatccagagatgaaactaggagaca agtcaaatcctgtagttccaaaccatttaaagaaacttgaagctaaaccattagctcagataggagaaactatggttcag aaagattttttcggaagagtaataaaacgtaaatcacttgaaaacaagccccaagccaagactgagaataagaagaagaa tgtgctacagacagacatatggtttcattttaccgagggattttcaaatgccgttcgtcgcaatgtcaaagtgaaagatt ttttgtaa |
|
Protein
| Protein ID | pfu_aug2.0_646.1_21021.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_646.1_21021.t1 RKENLTSEARKLAQLEEEAELLTNNLKEKENDRIGNVPVDDDDHSHVKKLLWVEKYAPAKYLDLLSEESINRILLHWLKL WDFLVFGKEKKVRKKEKEAEKKGNKDFKKKKFPEVTDELDKQNRPVQKIVLLNGPPGLGKTTLAHIVAKHCGYNVVEINA SDDRSADIFKTKLEAATQMRAVLGADPKPNCLVIDEIDGAPQTAINVLMSYIRRQDEPTAKKKKKDEALLLRPVICICND QYTPSLRVLRQNALVLNFPPTELAKLASRLSEVVKTEDMRVDMNTLMVLCAKTENDIRSCINTLQFCKTAHKELSVRLLD RMNVGQKDANKNLFSVWYEIFSKPKPKRRPVIGESVEPGRNSNSLESRADNILHMVQGSGEYSKLTLGIFENFLQCKVKD PKLDGMKSSLDWLCFTDQINKFMGTLQDYRLMPYLPYSAVNFHLIYAANQPHKIQYPYTDYEAFTKQTKLENLVSTMMSD MTAYVQKFISKIAIVMDLLPPLMDIIQPTFRPVNTQLYSTREKEELSNLVRTMIAYNMTYHQEKSPEGQYLYVLDPNMEE VIRFSGMKQHKQLTYAVKQLISREIELERLRRKENRDVKNTSKEKNPEMKLGDKSNPVVPNHLKKLEAKPLAQIGETMVQ KDFFGRVIKRKSLENKPQAKTENKKKNVLQTDIWFHFTEGFSNAVRRNVKVKDFL |
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