Gene
| Gene Model ID | pfu_aug2.0_648.1_27626 |
|---|---|
| Locus | scaffold648.1 : 42284 ... 65845 : - |
| To GenomeBrowser | scaffold648.1:42284..65845 |
| Genes list of scaffold | scaffold648.1 |
| Synonym | pfu_aug1.0_353.1_65365 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_648.1_27626.t1 | 2 | 1 | CBFB_NFYA | 492 | 506 | 2.1e-27 | 95.4 | 0.91 | 14000.0 | -3.3 |
| pfu_aug2.0_648.1_27626.t1 | 2 | 2 | CBFB_NFYA | 846 | 902 | 2.1e-27 | 95.4 | 1.4e-31 | 2.1e-27 | 95.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_648.1_27626.t1 | gi|573880657|ref|XP_006628531.1| | PREDICTED: nuclear transcription factor Y subunit alpha-like [Lepisosteus oculatus] | 2.0e-34 |
| pfu_aug2.0_648.1_27626.t1 | gi|637295946|ref|XP_008107951.1| | PREDICTED: nuclear transcription factor Y subunit alpha isoform X4 [Anolis carolinensis] | 2.0e-34 |
| pfu_aug2.0_648.1_27626.t1 | gi|637295937|ref|XP_008107949.1| | PREDICTED: nuclear transcription factor Y subunit alpha isoform X2 [Anolis carolinensis] | 2.0e-34 |
| pfu_aug2.0_648.1_27626.t1 | gi|637295951|ref|XP_008107952.1| | PREDICTED: nuclear transcription factor Y subunit alpha isoform X5 [Anolis carolinensis] | 2.0e-34 |
| pfu_aug2.0_648.1_27626.t1 | gi|637295933|ref|XP_008107948.1| | PREDICTED: nuclear transcription factor Y subunit alpha isoform X1 [Anolis carolinensis] | 2.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_648.1_27626.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_648.1_27626.t1 atggagaacattcaaatacaatccgttgtcatgccaacaacaaactacccggtacagccgttgctgttagcctctggaat gcctgtacagctgatttctgggcaggtgacctcagtaacctctcaacctcaggacctcatacaacaacctcaagttgtca atcaacaaccacaaccacagatattacagctgggtcaaggtcagttgataccagggcaacagatcgtgatacagacatta cagcaaggtcaaataatacaaggtcaaaccatgcatgtcccaggtcaaggcattccacaacagcattttcgattcgaaaa cacgatgaagaaatatcagatttcccgttggaattcctcaaaagagagtctatccagggactttggtacagatggggata ttggtctgcgagaggacattcataattttggagatttcgctcaaagtggggatgctgaaaagggcaataactctgctaat gatatatttaattacattgttcgtgtcaaatccccaacaaacgaacggatgggtaaaattaagagccgttcagaatactt tggtgacagcatgctcagtgcacaaacaatgaataaaaatagttcgaatcaaagtaatgaagagaaaggtgtcttagaac gaccgtttctcgataccgtgggtcattctcatgaaaaggatcggtatgtgccgatggccgacaactgtccggacgattct caagttctcctaaatcgttgctcaaaccaatttcataaagatggtaaaaaaattcagtcgatcgtagctgttgatgatat tgggagaaaagatacaattcctaatgttaaagcgtctccttccgatttgcttcttcattatagggaaggatatgacagcg ccatgagggaccacagaaacactacgtcgacatccaggagtttcctgacgggacccctgcaggacgtcacttataactgc tacatgaacgacaaaaaggaaaattccgcagatacacctcagtttcctgcacgaacaccgacgacacagctcaaggactt caacaccaatcagcacgacagacatctggcctttgacacaaagttcacacgatcaaactccgaatttcctcaaaaagatc tctctcgcgatgaatccttgagggaatatgacagtcttcctgggcaaagatgctttgttccgacatcatttcacagcgaa ctacttatcaacaacagtaaggttttgtcttcatatatagagaacgcagactacagtgagcaaattcagatggaagcctt gcatcattactctaaaagtctggcgcctaaaacaaatctttgccaaaagcagacgactgtaacatttcccatgaacaaaa tatgcaatgcatacgatcattttgatttcaaaactctcgagccaaaaaatggcaaaatatcatcaaaatggaatatggaa gatttaaaatggacaacgtcgtcgtctttggatatgattcagaaaaatcgaatttacagggagcgaatccatgaaaaatt ggatagatatatacaaacaaaggtggccagttctttacagacgccttccaagagtggtgacgatagcaaaaatattggat gccctttgacctcagagccagttggcgagatgcataatccatactgggatcaacggaaacttcataatcctcatccatgt cattccatccctcaacgaatcagaaatcagagcgaatctgtgtcaaagttgttgtttcaacaaccatcgggtcaaggaca aatgatgaccttaccaggacaaggacatccaatttgtccatctgccacagatgtgtccatggtgtatcaaaacactacgc caagctttacatcaaataatactgtgaacgggagtttccctgtccttcccgtgccatatccacgactgtcctgtgctttt ggcgggaatacccaaccacagacgtcatgtgtccaacagacactccagacaaacgtacagacgacacagtgtaataaact atatagtccaatgaaagcagtgaacatgtcaatgtctaatggctccaacgcaatttccggtcacacttcacccaatcatc agtttttgtcgtccaaaagtgtcccatccaccctatcatcttgtcagtatgcaaatcgaccgcccagtaactcaggtttg atgtcaatagcaccctccccacacatgggaatccccaatcaggcaattagtcaacataatggttcggtacacaacattcc aacaaccatttcaccattggtcactcctcatgcacaaacagacggttcagcgatgatgcgagtgcaagaaggtcagaact tacttcagaacggttcccagttgttacagtgtggttcacaagtgttcaatgggatggcaccacaagttataagtgctggt aatacggatcaactgctacaggcgggcgttcctccacatgtcatacagctagccaataacagccagcagcaaattatggt tgttaacggcagtagtttacaagcgctaccactaccgtcatctgaatctccggaagaggaaccactttatgtaaatgcta aacaatataaccgtatcctgaaaagacggatagcgcgagccaagcttgaagccaaagggaaaataccgaaggaaagaaag aaatacctacacgagtctcgacatcgacatgcaatgagtcgtaacagaggggaaggggggaggttttactccacaaagga agtgaagatagaaccttatgacgagttggtgctgaaggacgaacctctggatatcattgattcactgactgaaaatggag taagagctgttccacaattgacaagaatgaatcaaacacatgcgcaaacagtttag |
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Protein
| Protein ID | pfu_aug2.0_648.1_27626.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_648.1_27626.t1 MENIQIQSVVMPTTNYPVQPLLLASGMPVQLISGQVTSVTSQPQDLIQQPQVVNQQPQPQILQLGQGQLIPGQQIVIQTL QQGQIIQGQTMHVPGQGIPQQHFRFENTMKKYQISRWNSSKESLSRDFGTDGDIGLREDIHNFGDFAQSGDAEKGNNSAN DIFNYIVRVKSPTNERMGKIKSRSEYFGDSMLSAQTMNKNSSNQSNEEKGVLERPFLDTVGHSHEKDRYVPMADNCPDDS QVLLNRCSNQFHKDGKKIQSIVAVDDIGRKDTIPNVKASPSDLLLHYREGYDSAMRDHRNTTSTSRSFLTGPLQDVTYNC YMNDKKENSADTPQFPARTPTTQLKDFNTNQHDRHLAFDTKFTRSNSEFPQKDLSRDESLREYDSLPGQRCFVPTSFHSE LLINNSKVLSSYIENADYSEQIQMEALHHYSKSLAPKTNLCQKQTTVTFPMNKICNAYDHFDFKTLEPKNGKISSKWNME DLKWTTSSSLDMIQKNRIYRERIHEKLDRYIQTKVASSLQTPSKSGDDSKNIGCPLTSEPVGEMHNPYWDQRKLHNPHPC HSIPQRIRNQSESVSKLLFQQPSGQGQMMTLPGQGHPICPSATDVSMVYQNTTPSFTSNNTVNGSFPVLPVPYPRLSCAF GGNTQPQTSCVQQTLQTNVQTTQCNKLYSPMKAVNMSMSNGSNAISGHTSPNHQFLSSKSVPSTLSSCQYANRPPSNSGL MSIAPSPHMGIPNQAISQHNGSVHNIPTTISPLVTPHAQTDGSAMMRVQEGQNLLQNGSQLLQCGSQVFNGMAPQVISAG NTDQLLQAGVPPHVIQLANNSQQQIMVVNGSSLQALPLPSSESPEEEPLYVNAKQYNRILKRRIARAKLEAKGKIPKERK KYLHESRHRHAMSRNRGEGGRFYSTKEVKIEPYDELVLKDEPLDIIDSLTENGVRAVPQLTRMNQTHAQTV |
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