Gene
| Gene Model ID | pfu_aug2.0_648.1_27627 |
|---|---|
| Locus | scaffold648.1 : 69826 ... 80657 : + |
| To GenomeBrowser | scaffold648.1:69826..80657 |
| Genes list of scaffold | scaffold648.1 |
| Synonym | pfu_aug1.0_47886.1_12641 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_648.1_27627.t1 | 6 | 1 | RCC1 | 19 | 66 | 0.0 | 200.6 | 0.00013 | 1.0 | 9.6 |
| pfu_aug2.0_648.1_27627.t1 | 7 | 1 | RCC1_2 | 19 | 29 | 3.09999e-40 | 134.9 | 0.0064 | 47.0 | 3.7 |
| pfu_aug2.0_648.1_27627.t1 | 7 | 2 | RCC1_2 | 59 | 83 | 3.09999e-40 | 134.9 | 1.4e-07 | 0.001 | 18.5 |
| pfu_aug2.0_648.1_27627.t1 | 6 | 2 | RCC1 | 70 | 117 | 0.0 | 200.6 | 9.7e-11 | 7.2e-07 | 29.3 |
| pfu_aug2.0_648.1_27627.t1 | 7 | 3 | RCC1_2 | 104 | 133 | 3.09999e-40 | 134.9 | 5.8e-12 | 4.3e-08 | 32.5 |
| pfu_aug2.0_648.1_27627.t1 | 6 | 3 | RCC1 | 121 | 172 | 0.0 | 200.6 | 6.8e-16 | 5.0e-12 | 45.8 |
| pfu_aug2.0_648.1_27627.t1 | 7 | 4 | RCC1_2 | 160 | 188 | 3.09999e-40 | 134.9 | 7.4e-15 | 5.5e-11 | 41.7 |
| pfu_aug2.0_648.1_27627.t1 | 6 | 4 | RCC1 | 176 | 227 | 0.0 | 200.6 | 4.2e-09 | 3.1e-05 | 24.0 |
| pfu_aug2.0_648.1_27627.t1 | 7 | 5 | RCC1_2 | 214 | 243 | 3.09999e-40 | 134.9 | 5.5e-11 | 4.1e-07 | 29.4 |
| pfu_aug2.0_648.1_27627.t1 | 6 | 5 | RCC1 | 230 | 277 | 0.0 | 200.6 | 1.4e-15 | 1.1e-11 | 44.7 |
| pfu_aug2.0_648.1_27627.t1 | 7 | 6 | RCC1_2 | 265 | 293 | 3.09999e-40 | 134.9 | 1.9e-10 | 1.4e-06 | 27.7 |
| pfu_aug2.0_648.1_27627.t1 | 6 | 6 | RCC1 | 282 | 330 | 0.0 | 200.6 | 1.4e-19 | 1.0e-15 | 57.6 |
| pfu_aug2.0_648.1_27627.t1 | 7 | 7 | RCC1_2 | 317 | 333 | 3.09999e-40 | 134.9 | 0.00058 | 4.3 | 7.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_648.1_27627.t1 | gi|602648595|ref|XP_007430713.1| | PREDICTED: secretion-regulating guanine nucleotide exchange factor [Python bivittatus] | 0.0 |
| pfu_aug2.0_648.1_27627.t1 | gi|327260067|ref|XP_003214857.1| | PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X1 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_648.1_27627.t1 | gi|677991995|ref|XP_009075619.1| | PREDICTED: secretion-regulating guanine nucleotide exchange factor, partial [Acanthisitta chloris] | 0.0 |
| pfu_aug2.0_648.1_27627.t1 | gi|696964755|ref|XP_009570209.1| | PREDICTED: secretion-regulating guanine nucleotide exchange factor [Cuculus canorus] | 0.0 |
| pfu_aug2.0_648.1_27627.t1 | gi|675627320|ref|XP_008942038.1| | PREDICTED: secretion-regulating guanine nucleotide exchange factor, partial [Merops nubicus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_648.1_27627.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_648.1_27627.t1 atgactgtatacccgatggtatttttagctcacctgaaccaaaggctcaactgtttactaacatgcggaagtaatgataa aggtcagattggtaacggagactgggattgtacggccttgacacggagaacattgtccgggagagagtgtgatgtcagtg ttcataaggccgttggtggctgggattttactctacttcttgacaataaaggtgtagtatattccatgggatccaatact ttcagtcagcttggaagaagtgacgtcagtaagacactggacaaggtagaatttccagggaacaataaaatagtagacat cgccgccggacttcgtcactgtgcagctgtgacagatacaggttctgtttactgctggggagctgggagaaaaggacagc tagggattctccaagagggaaaacctccaaacaaacttttaactccaacaaaagttgagggtataccatcccaggcagta gcggtggcaactggtgcctaccatactttgattctaacagataccggtcagttgctaagttggggtgataatcgtcatgg ccagactggtcaagatcctttagtgaccactcaagtgacattgccaactatccttcaggcttcacttatgaatgagacag tagaacaagttcattctggatggacacataatgtggtcttaacaaagtcaggaaagctattcacatggggtcgggctgat tatgggcagctaggtcggccatatgagcagtcacccgacttcatgcctcggccaataacaggattggatgtcatcaaatc ggtatcatgtggctccgagcataacctagcatgctctgttactggcaaggtgtattcctgggggtggaatgagcatggta tatgtgggactggggatgaagtgaacgtgccatatcccaagcaggtggcagcacttgctaatcggcacgtgaccagtgtg ggatgcggagcaggacattcttttgctgtttgtcaaagtgatccatag |
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Protein
| Protein ID | pfu_aug2.0_648.1_27627.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_648.1_27627.t1 MTVYPMVFLAHLNQRLNCLLTCGSNDKGQIGNGDWDCTALTRRTLSGRECDVSVHKAVGGWDFTLLLDNKGVVYSMGSNT FSQLGRSDVSKTLDKVEFPGNNKIVDIAAGLRHCAAVTDTGSVYCWGAGRKGQLGILQEGKPPNKLLTPTKVEGIPSQAV AVATGAYHTLILTDTGQLLSWGDNRHGQTGQDPLVTTQVTLPTILQASLMNETVEQVHSGWTHNVVLTKSGKLFTWGRAD YGQLGRPYEQSPDFMPRPITGLDVIKSVSCGSEHNLACSVTGKVYSWGWNEHGICGTGDEVNVPYPKQVAALANRHVTSV GCGAGHSFAVCQSDP |
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