Gene
| Gene Model ID | pfu_aug2.0_6480.1_02855 |
|---|---|
| Locus | scaffold6480.1 : 3760 ... 19173 : - |
| To GenomeBrowser | scaffold6480.1:3760..19173 |
| Genes list of scaffold | scaffold6480.1 |
| Synonym | pfu_aug1.0_4520.1_30706 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| homeobox protein prophet of pit-1-like | GO:0003677 GO:0005634 GO:0007399 GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_6480.1_02855.t1 | 1 | 1 | Homeobox | 7 | 63 | 3.9e-19 | 68.0 | 1.2e-22 | 5.9e-19 | 67.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_6480.1_02855.t1 | gi|676457978|ref|XP_009054826.1| | hypothetical protein LOTGIDRAFT_100384, partial [Lottia gigantea] | 2.0e-15 |
| pfu_aug2.0_6480.1_02855.t1 | gi|742238644|ref|XP_010903188.1| | PREDICTED: homeobox protein prophet of Pit-1-like [Esox lucius] | 6.0e-15 |
| pfu_aug2.0_6480.1_02855.t1 | gi|449485972|ref|XP_004175263.1| | PREDICTED: LOW QUALITY PROTEIN: paired mesoderm homeobox protein 2A, partial [Taeniopygia guttata] | 8.0e-15 |
| pfu_aug2.0_6480.1_02855.t1 | gi|18859337|ref|NP_571301.1| | 1.0e-14 | |
| pfu_aug2.0_6480.1_02855.t1 | gi|542156846|ref|XP_005487207.1| | PREDICTED: paired mesoderm homeobox protein 2A, partial [Zonotrichia albicollis] | 1.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_6480.1_02855.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_6480.1_02855.t1 attcagacaccaagcgccctcgccggacgcgtaccgttttctctgatgacgctttggacgcactcgaggacgcattccag gagaattgttacccggatgttttccaacgctattctctcgcacaggacatcggagaagaagagtcgagaatccaggtatg gttccagaacaggagagccaggtccaagcgtcaacggaaagtctcaaacagtcaacataaaaaatcatcatcgtcacgtg atctgtcagcttctaccacaacattgagaagaccatctcgtgcatgtgaccagccttccagttctgacggctgccgaccc attccaccatactatcccgttttaccagcctatgtaatcccagctcttccgtacgcaccatcctggagttcccacccagc catgctgcagacccccgggggaatggtacctcctcctctcattcatcccagatttgagccttcctcaccgctctggtctc cgggcttcagtccgtctttcaagaagatattcgacttcccgtccaaccctctgtcaccactcccctctacaccagaggtt tcccagggtgctgaagacaacttatctacgttccgtatcactcatgcgggtggctttgcagagcgcagtggaccagattc cgttacactccgtgttccgtctaaatcttcatctatttacacaccgctccatgtgcctggaataccagccccgcccccta ggtcacatgatgcaaagaatgtctctggattggaggatcttagcccagctgactccgcctactccagtgctagtggttcc agtagcgaactacagacttcccatcttcacagtccaacaaccccgcctagtgtatag |
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Protein
| Protein ID | pfu_aug2.0_6480.1_02855.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_6480.1_02855.t1 SDTKRPRRTRTVFSDDALDALEDAFQENCYPDVFQRYSLAQDIGEEESRIQVWFQNRRARSKRQRKVSNSQHKKSSSSRD LSASTTTLRRPSRACDQPSSSDGCRPIPPYYPVLPAYVIPALPYAPSWSSHPAMLQTPGGMVPPPLIHPRFEPSSPLWSP GFSPSFKKIFDFPSNPLSPLPSTPEVSQGAEDNLSTFRITHAGGFAERSGPDSVTLRVPSKSSSIYTPLHVPGIPAPPPR SHDAKNVSGLEDLSPADSAYSSASGSSSELQTSHLHSPTTPPSV |
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