Gene
| Gene Model ID | pfu_aug2.0_652.1_07765 |
|---|---|
| Locus | scaffold652.1 : 110251 ... 112657 : - |
| To GenomeBrowser | scaffold652.1:110251..112657 |
| Genes list of scaffold | scaffold652.1 |
| Synonym | pfu_aug1.0_1364.1_58463 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| toll-like receptor 13 | GO:0002755 GO:0005768 GO:0009615 GO:0019843 GO:0034178 GO:0042803 GO:0043408 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_652.1_07765.t1 | 1 | 1 | TIR | 1 | 119 | 9.7e-20 | 70.4 | 2.2e-23 | 1.1e-19 | 70.2 |
| pfu_aug2.0_652.1_07765.t1 | 1 | 1 | TIR_2 | 10 | 92 | 1.6e-13 | 50.6 | 4.2e-17 | 2.1e-13 | 50.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_652.1_07765.t1 | gi|548538642|ref|XP_005752703.1| | PREDICTED: toll-like receptor 13-like [Pundamilia nyererei] | 2.0e-22 |
| pfu_aug2.0_652.1_07765.t1 | gi|554886926|ref|XP_005953017.1| | PREDICTED: toll-like receptor 13-like, partial [Haplochromis burtoni] | 3.0e-22 |
| pfu_aug2.0_652.1_07765.t1 | gi|395542897|ref|XP_003773361.1| | PREDICTED: toll-like receptor 6 [Sarcophilus harrisii] | 2.0e-20 |
Transcript
| Transcript ID | pfu_aug2.0_652.1_07765.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_652.1_07765.t1 atgctaaagaatgtagaggaagctggaaatttaagaatatgctgtcataacagggactttatcccaggggtagatatagc agaaaacataactcgagccatacattccagtaggagaaccatctgtgtgatgtctcctaactatcttaattcctattggt gcagatttgaactgaacatggcgagaatggagagtatctactcaagaaagggagaggaaatattgtttctggtgttatac aagggaatagaacaatgtgaaataccgtctttagtgattgatcttattgataaaaaatcttacatagaatttcccgatga tcctcagggaaatgttgttttctggaataacatcaggaggacaatctcgatgcaaatatag |
|
Protein
| Protein ID | pfu_aug2.0_652.1_07765.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_652.1_07765.t1 MLKNVEEAGNLRICCHNRDFIPGVDIAENITRAIHSSRRTICVMSPNYLNSYWCRFELNMARMESIYSRKGEEILFLVLY KGIEQCEIPSLVIDLIDKKSYIEFPDDPQGNVVFWNNIRRTISMQI |
|