Gene
| Gene Model ID | pfu_aug2.0_653.1_11034 |
|---|---|
| Locus | scaffold653.1 : 1038 ... 12825 : - |
| To GenomeBrowser | scaffold653.1:1038..12825 |
| Genes list of scaffold | scaffold653.1 |
| Synonym | pfu_aug1.0_30400.1_04736 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| betaine--homocysteine s-methyltransferase 1-like | GO:0005737 GO:0008270 GO:0008898 GO:0009086 GO:0032259 GO:0047150 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_653.1_11034.t1 | 4 | 1 | S-methyl_trans | 27 | 68 | 0.0 | 167.0 | 2.8e-07 | 0.001 | 18.4 |
| pfu_aug2.0_653.1_11034.t1 | 4 | 2 | S-methyl_trans | 64 | 166 | 0.0 | 167.0 | 5.9e-11 | 2.2e-07 | 30.4 |
| pfu_aug2.0_653.1_11034.t1 | 4 | 3 | S-methyl_trans | 222 | 259 | 0.0 | 167.0 | 0.00012 | 0.43 | 9.8 |
| pfu_aug2.0_653.1_11034.t1 | 4 | 4 | S-methyl_trans | 283 | 571 | 0.0 | 167.0 | 4.1e-34 | 1.5e-30 | 106.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_653.1_11034.t1 | gi|260832448|ref|XP_002611169.1| | hypothetical protein BRAFLDRAFT_88432 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_653.1_11034.t1 | gi|676475099|ref|XP_009060363.1| | hypothetical protein LOTGIDRAFT_183387 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_653.1_11034.t1 | gi|524895109|ref|XP_005104042.1| | PREDICTED: betaine--homocysteine S-methyltransferase 1-like [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_653.1_11034.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_653.1_11034.t1 atgtcaaaaaaagggttagtcgaacgttttaaagatggaggttccgttctcatcgcggagggatacatgtgggaatttga aagacgaggttacttgaaagctggaggctttataccggaagtggttctggaccatccggatatggtccgcgcaatgcacg aggagtttgtacattccggaaccgacattgtagaggcatttacggagcaaattgaatgggcgatagaggaaggggcagat ttcatgataggagaaactttcaacgactttggagagggcatgttggctttagaggcgatacagaaatatggaaacggcgt accagctgtgattaccctaactccctatataccggatgtaactacagacgacataccgtttccggaagcatgtcggaggt tggaggaagccggcgcagccgtagtagggttaaattgtgggcgtggcccagcgacgatgctacctctccttaaagaaatc agaaaagtctgcaaggtggtaccctatttacattttcattatgaatgtttcctgagagaacaaggtccaattgcagcact tccggtcccttttcgatgtcgtgacgactgtaggacttttcaatctttaaaagatcctgattcaggtgtacccttgtatc cagtggatctatcctgtgtccaatgtaaccgatccgatatcaagaagtttgcacaggaatgtaaggatatcggaattaac tacgttggcatttgttgtggaaactgtcctattttcatgcgagaactggcggaagtctacggtcgcaaaccggaagcctg tttattggatcgactgaaggaggatggaggaggggtggtggtggcggagggttacgtcagagagtttgagaggaggggtt atctatcggccggagtcttcgtacctgtggtggtactagaacacccagacatggtcaagaggatgcatgaggagttcgtc catgcaggatctgacgttgtactagcttttacatactatggacatcgagataaacttcgccacattggccgagaagacga acttgaaaaactgaacagaaccgcattgaaaatggcgcgggaagtcgctgataaaaccggaaccttgatggcaggtggga tttgcaattccggggtgtacaatcccgcagatccgtcaacttttaaaaaagtagaaaacatgtttaaggagcagatagaa tgggctgtagaggaaggagcggactatattgttggagagacattcaatgattatggggaggccaaaattgctctggaatc aatacagaaatacggaaagggtcttccagcagtcattacaatgacagcctacatccctgatgtcaccactgatgacgtac cattcccagaagcatgccggaaattggaagaagctggcgcagccgtagttgggttaaactgtggcagaggacctgcaact atgcttccgttgattaaggaaatcagaaaagcgtgtaaaggtccgattgctgcagtccctgttccttatcgttgcacgga tgagagtagaactttccagtccttgaaagatcctgtcacaggtgaacgtctgtaccctacaaacatatcctgctttgagt gtaaccgttctgacattagaaagtttgccgaggaggcgaagaatatcggcgtgaagtacatcggggtatgttgtggaaac aatggcgggctaacgagggaagtggcacaagtctatgaccgcaaaccggaagcctgtaaatactcgccagacatctcgct cagttttgtgtttggagagtctagcaaagaagaaaaatattccaggtcaagcaaaatccgggacttcatggtcaaaggaa attaa |
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Protein
| Protein ID | pfu_aug2.0_653.1_11034.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_653.1_11034.t1 MSKKGLVERFKDGGSVLIAEGYMWEFERRGYLKAGGFIPEVVLDHPDMVRAMHEEFVHSGTDIVEAFTEQIEWAIEEGAD FMIGETFNDFGEGMLALEAIQKYGNGVPAVITLTPYIPDVTTDDIPFPEACRRLEEAGAAVVGLNCGRGPATMLPLLKEI RKVCKVVPYLHFHYECFLREQGPIAALPVPFRCRDDCRTFQSLKDPDSGVPLYPVDLSCVQCNRSDIKKFAQECKDIGIN YVGICCGNCPIFMRELAEVYGRKPEACLLDRLKEDGGGVVVAEGYVREFERRGYLSAGVFVPVVVLEHPDMVKRMHEEFV HAGSDVVLAFTYYGHRDKLRHIGREDELEKLNRTALKMAREVADKTGTLMAGGICNSGVYNPADPSTFKKVENMFKEQIE WAVEEGADYIVGETFNDYGEAKIALESIQKYGKGLPAVITMTAYIPDVTTDDVPFPEACRKLEEAGAAVVGLNCGRGPAT MLPLIKEIRKACKGPIAAVPVPYRCTDESRTFQSLKDPVTGERLYPTNISCFECNRSDIRKFAEEAKNIGVKYIGVCCGN NGGLTREVAQVYDRKPEACKYSPDISLSFVFGESSKEEKYSRSSKIRDFMVKGN |
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