Gene
| Gene Model ID | pfu_aug2.0_653.1_11037 |
|---|---|
| Locus | scaffold653.1 : 42166 ... 50081 : + |
| To GenomeBrowser | scaffold653.1:42166..50081 |
| Genes list of scaffold | scaffold653.1 |
| Synonym | pfu_aug1.0_4246.1_01680 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_653.1_11037.t1 | 1 | 1 | RVT_1 | 584 | 744 | 7.0e-24 | 84.3 | 5.4e-27 | 1.3e-23 | 83.4 |
| pfu_aug2.0_653.1_11037.t1 | 1 | 1 | rve | 1162 | 1274 | 6.9e-24 | 84.2 | 7.5e-27 | 1.9e-23 | 82.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_653.1_11037.t1 | gi|597753106|ref|XP_007238394.1| | PREDICTED: uncharacterized protein LOC103045200 [Astyanax mexicanus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_653.1_11037.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_653.1_11037.t1 atggtatccattcgattcatatgtttgcattatggggtccttggagcaggaggaatgccaccgatgtgcacaaaaccctc ccgagaccaggtgcgtgtccatctaaccctccaacataaaggagtatatccagcctccactatccgacaatctattcgga actcgttgcgtggcaaagcccggtccatacttgtcactatgggggaatacgtcacaccagattccattatactgaaactg gaaagtacctttgggaatgtttgcgacaaagaagccatactggaagacttttaccgtcagtcgcagaatactactgagag tgtcgcagaatacggaatgcgtctagccaatttgctccagattcctgttgatcgaggtcatattacatcagacgaacgtg atagtatgctgcgttccaaattcttttcgggacttaaagatccactgttgaagaccgctattcgttttaagtatgaagct acccgagactttgatactttgctgcgtgacactcgcgccatagagcagcagatgaaagcgacatccgcggcacctacacc tactcagccagataccaagcctgcagtgaaacaacagacaacttcacgagtatcactagaagatatcgcaaagaagctag agactttgactactcaagtcaacgatcttcagacagagatgtcgaccgttcgaaatggtaaccaaagacaaggttccagt taccgaggtactacatatgggaatcacagaggatcctttagtaatagagggacatcccagtcacgtcaattttatagagg tgcaagatccaactaccctagaaaccagacctatggaaaccaaagcagaggatatggttctataaaccaaggcagaggat atggttctataaaccaaggcagaggatatggttctttaaaccgggattaagagaaagaactagctcgaaacaaccaaaca ttagccatagtaaagagttcagaagcgaaagatattaccattccgccaaatacagaagttataatgaaagactacatgac caagcagattccaactcatcctatgtgtgcgattttacagccaacgctgaaatctaagctaccatcagatttggacatat cgccttacttgatcacctaccattatgatgacagcgacaacattccggtgtgtatcagtaacgttaccacgatgacagct accatccatccgcatgacattctatgtgagattcagcctgtttctgtccagtgtaccatgaatgctgtcaaggatattgt cgatcaaccatccgataagattagagggatgaatatagataaggacgaactagatgaatcacagatacaccaccttgaag acttactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtc gatcaaccatccgataagattagagggatgaatatagataaggacgaactagatgaatcacagatacaccaccttgaaga cttactacagcgatatgatgacatactgtccaaggcagatgatgatattggtcacaacactaccgtgaaacaccgcattg acctttacgatcctgtaccctttaagcaacgctatagacgaattccaccatcgatgtttagtcaagttagagatcatctt cagcaactactatctgcaggaatcattcgtaaatcccattcgccttttacctctaatgtcgtgttggccaagaagaaaga tggaaagttacgtttatgtatagactttaggcagcttaaccaacgtacgattaaagataactatgccctgccacgcattg atgaacttcttgagtcactttctggtaaccgctacttttctgttctggacatgaaatctggataccaccagatagagata gaggattcacacaaggagcgaacagcctttacagtgggaccccttggcttttatgagtataaccggatgcctttcgggtt gacaaacgcgccggccacttaccaaagagtcatggaggaatgtcttggggatctccatctgaacatctgttttatctatc tcgatgacctgattattgtgtccaagacctttgaagaacacttagatagacttcaacgtgttttccagaaactgagggaa gccggactgaagttgactccaaagaaatgccaccttatgatgaagaaagtgaagtatgtcggtcatgttgtatcagaaga gggaatagagcctgatccacagaagatagagaaagttatagaatggcccactccaacatccaaagaagaagttagacaat tcctaggtttcgttggctattataggaagtttgtgaaggatttttctaagatcgctaaacccttaaacagccttttacca gctactagacgaaaaggaaccaagaaaaagaaagaagaagccatgaatccctttacctggaacgaagaacaacaaacagc tttcgatgctttgaagtcccagctcatgaagccacctatacttggttacccagactataagcagcccttcgaactacata cagatgcctgtgcgaaaggattaggtgctgtcttataccaacttcaaggagacaagaaacgggtcatttcctatgccagc cgtggactttccaaagcagagcaacactatccagctcataagcttgaatttctttcattgaaatgggccgtcacggagaa atttaaagactacttatacggcaaccagttcacagtatacactgacaataatccgctcacctatgtgctaacatctgcac aactcgatgccactggtcaccgctggatcgccgcattggcagcctacaactttgaccttaagtatcgtccagggagaaac aacgctgatgctgatgccatgtcacgtttacctggaatactagaagatcatcgcacatcagatacagtcacctgcgattc tatcaaagccatttgccagtcacatcagattcagcctatttacatagagagtttgacatcatctccagacgttatagata gccatctagatttacccagatttccaacgatagatatcagatcagaacaacactgcgatcctgatttatgcctctggttt gatataattcagcagcaacagaaggttaccaagcaacaactcccacctaacacctggcagagtactctacttcagaatta tgaccgcctgcgtgttattgataacatcttattcagagagattatcatagatgatcaacctaagctccagcagattcttc cgagctcgctcattccacgagtactcaactacctgcatgacagattcggccatcaaggaagagatagaacaacatcttta gtaaaagacagatttttctggcctgggatgtgcaaagatatagataactggatttccaactgcggcagatgcgtacgaag aaagtcaccaaccaccactagagctccattagttaacatctccacctcagagccattggaactcgtatgcatggactatc tttgcctagaaagatcaaagggtggattcgattcagtacttgttatcaccgaccatttcactaagtactcgattgccata ccaaccagaaatcagactgcaaggacaacagcagaagcactcttcagaaacttcatcgtacattacggcattccatctaa gcttcattccgaccaaggagcaaactttgaaagcaaagtgatcaaagaactgtgccatcttcttaacatcacgaagagca gaacaactccttaccatcctatgggcaatggacagtgcgagcgttttaaccggacattgattggaatgctaggaacacta gaagaagatcagaagaaagactggaagaactatattagtccgctcgttcatgcctacaactgcacccgccatgattccac cggcgtatctccatatctactgatgttcgggagagagcctagattgcccattgatatatcagaaccgactccacgaccga agaagcctgaacatttaccgagcgagacaaagaagtcacctcaacctgaagaaaaggcagatatacctactgatcccagc actgttgtatcagaacacaacactagccatggcgaatcagaagatgaagatgatattgttttggtgcgaaacccagtgat atgtccaagagaagattcttgttcatctgcagacactggagggacagaatccactacctcgcagagtccatctgataatc acgatgcgacatctgaaaagcagtcggaccataatgaccgtattgaaagcaccagttccgagtcggttgccagatcatca agagatgctttggaccctacacagaatgatggctcatctagtcactcggaatccgtacattccgaacaaccaagacgacc aacccgagagagaagacctcctgcctggaccaaagactatgatatgtgtgctagtgtaccgatagctgctggtccagact ggaaaatccgagcagattatttgaaaaagttttgcgcgttccgaactgttcagtga |
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Protein
| Protein ID | pfu_aug2.0_653.1_11037.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_653.1_11037.t1 MVSIRFICLHYGVLGAGGMPPMCTKPSRDQVRVHLTLQHKGVYPASTIRQSIRNSLRGKARSILVTMGEYVTPDSIILKL ESTFGNVCDKEAILEDFYRQSQNTTESVAEYGMRLANLLQIPVDRGHITSDERDSMLRSKFFSGLKDPLLKTAIRFKYEA TRDFDTLLRDTRAIEQQMKATSAAPTPTQPDTKPAVKQQTTSRVSLEDIAKKLETLTTQVNDLQTEMSTVRNGNQRQGSS YRGTTYGNHRGSFSNRGTSQSRQFYRGARSNYPRNQTYGNQSRGYGSINQGRGYGSINQGRGYGSLNRDXEKELARNNQT LAIVKSSEAKDITIPPNTEVIMKDYMTKQIPTHPMCAILQPTLKSKLPSDLDISPYLITYHYDDSDNIPVCISNVTTMTA TIHPHDILCEIQPVSVQCTMNAVKDIVDQPSDKIRGMNIDKDELDESQIHHLEDLXXXXXXXXXXXXXXXXXXXXXXXIV DQPSDKIRGMNIDKDELDESQIHHLEDLLQRYDDILSKADDDIGHNTTVKHRIDLYDPVPFKQRYRRIPPSMFSQVRDHL QQLLSAGIIRKSHSPFTSNVVLAKKKDGKLRLCIDFRQLNQRTIKDNYALPRIDELLESLSGNRYFSVLDMKSGYHQIEI EDSHKERTAFTVGPLGFYEYNRMPFGLTNAPATYQRVMEECLGDLHLNICFIYLDDLIIVSKTFEEHLDRLQRVFQKLRE AGLKLTPKKCHLMMKKVKYVGHVVSEEGIEPDPQKIEKVIEWPTPTSKEEVRQFLGFVGYYRKFVKDFSKIAKPLNSLLP ATRRKGTKKKKEEAMNPFTWNEEQQTAFDALKSQLMKPPILGYPDYKQPFELHTDACAKGLGAVLYQLQGDKKRVISYAS RGLSKAEQHYPAHKLEFLSLKWAVTEKFKDYLYGNQFTVYTDNNPLTYVLTSAQLDATGHRWIAALAAYNFDLKYRPGRN NADADAMSRLPGILEDHRTSDTVTCDSIKAICQSHQIQPIYIESLTSSPDVIDSHLDLPRFPTIDIRSEQHCDPDLCLWF DIIQQQQKVTKQQLPPNTWQSTLLQNYDRLRVIDNILFREIIIDDQPKLQQILPSSLIPRVLNYLHDRFGHQGRDRTTSL VKDRFFWPGMCKDIDNWISNCGRCVRRKSPTTTRAPLVNISTSEPLELVCMDYLCLERSKGGFDSVLVITDHFTKYSIAI PTRNQTARTTAEALFRNFIVHYGIPSKLHSDQGANFESKVIKELCHLLNITKSRTTPYHPMGNGQCERFNRTLIGMLGTL EEDQKKDWKNYISPLVHAYNCTRHDSTGVSPYLLMFGREPRLPIDISEPTPRPKKPEHLPSETKKSPQPEEKADIPTDPS TVVSEHNTSHGESEDEDDIVLVRNPVICPREDSCSSADTGGTESTTSQSPSDNHDATSEKQSDHNDRIESTSSESVARSS RDALDPTQNDGSSSHSESVHSEQPRRPTRERRPPAWTKDYDMCASVPIAAGPDWKIRADYLKKFCAFRTVQ |
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