Gene
| Gene Model ID | pfu_aug2.0_655.1_17691 |
|---|---|
| Locus | scaffold655.1 : 91136 ... 106194 : + |
| To GenomeBrowser | scaffold655.1:91136..106194 |
| Genes list of scaffold | scaffold655.1 |
| Synonym | pfu_aug1.0_41716.1_19830 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ribonucleases p mrp protein subunit pop1 | GO:0016020 GO:0016070 GO:0044464 GO:0044767 GO:0048856 GO:0065007 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_655.1_17691.t1 | 4 | 1 | POP1 | 31 | 95 | 2.8e-36 | 124.9 | 2.2e-15 | 1.7e-11 | 44.1 |
| pfu_aug2.0_655.1_17691.t1 | 3 | 1 | POPLD | 88 | 117 | 4.9e-27 | 93.6 | 0.12 | 870.0 | -0.2 |
| pfu_aug2.0_655.1_17691.t1 | 4 | 2 | POP1 | 93 | 171 | 2.8e-36 | 124.9 | 3.4e-31 | 2.5e-27 | 95.7 |
| pfu_aug2.0_655.1_17691.t1 | 3 | 2 | POPLD | 565 | 656 | 4.9e-27 | 93.6 | 6.6e-31 | 4.9e-27 | 93.6 |
| pfu_aug2.0_655.1_17691.t1 | 4 | 3 | POP1 | 763 | 763 | 2.8e-36 | 124.9 | 2.0 | 15000.0 | -5.7 |
| pfu_aug2.0_655.1_17691.t1 | 3 | 3 | POPLD | 773 | 802 | 4.9e-27 | 93.6 | 0.45 | 3300.0 | -2.1 |
| pfu_aug2.0_655.1_17691.t1 | 4 | 4 | POP1 | 777 | 802 | 2.8e-36 | 124.9 | 0.36 | 2700.0 | -2.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_655.1_17691.t1 | gi|512846309|ref|XP_004915183.1| | PREDICTED: ribonucleases P/MRP protein subunit POP1 isoform X2 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_655.1_17691.t1 | gi|512846302|ref|XP_004915182.1| | PREDICTED: ribonucleases P/MRP protein subunit POP1 isoform X1 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_655.1_17691.t1 | gi|597745508|ref|XP_007234784.1| | PREDICTED: ribonucleases P/MRP protein subunit POP1 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_655.1_17691.t1 | gi|602636004|ref|XP_007424862.1| | PREDICTED: ribonucleases P/MRP protein subunit POP1 [Python bivittatus] | 0.0 |
| pfu_aug2.0_655.1_17691.t1 | gi|556994015|ref|XP_006001089.1| | PREDICTED: ribonucleases P/MRP protein subunit POP1 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_655.1_17691.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_655.1_17691.t1 atggacaacaactttcgcggccagaaaaggaaacgtgaggaagaaccagacatactttgtcaggctccaagggagatcag tgttgtacagtatgcccagagtcgagcctcagagatccaagctcttagtcaagaggttaacaagaagaatgcatcctcat tcgtcaacacattcattccacgtcatatgagacgtcgtgctatgagtcacaatgtcaaaagatttccaaggaggatcaga gacaaattaaatgtgaagggcattcaaaccaagcgtccaagcagaaaatatcgccggcgtccaaagaatctactggcaga gtataatcgcagacagaggaagcatgtgtggatggagacccatatttggcacgctaaacgattcatcatggccaacaagt ggggatatagaatacccctccatcccacacagaaaggcacaagggctgcgtatagggccacgcagaggtcatgtcagatt atggacatgtcatacttgtgttgtattgaaatcgttggcatagaggagaacatactacagggcttggaccaccttaccag cttagagacaggccctacattcagagccaagtcctacattcgaggtctacgagaaggaagccttgtactgtaccataaag actcatatccctacaatgctattggctatgtgacatttatgtggcaaccaatcatagagcagcttagcatttcaaattcc cagagaacattatggatatggtgtcacccgtcctattaccaggaagtttgggatgaactaaaattctgctatgtaagttc agaaaatagggaagcagtaaataaatatgagaacttgacgagggaagaagattcagttcctttaactttaccttctgagc ctgaaaagaaaaacacaacaaagactgtagtcatttctgcagagaaaggaactattggttcatatttgaaaacagcgtcg gaatctgttgaaaatgatgaatcttctgataaaaaacaaaatggtgactctgaatctgccaacagtcctaaatttatgtc atgctcaataggtcatgtaaccttgacctccctgaaggattgcctggtgcgacacagactgaccggtccacgatctcggg ccattctagctagtgtgctcagaccatcagatatagaacttgaccacttaaactctacagaacaagcatgtcaagtcagt gtcgagttagaatcacagtcaaagaaatccactgtgtggtggcaggattattatagcaatccacaccacctgtctgtgta taaagctcagagacagtttgtagagagggaactatactcctgtcccactccatctgatgtccctcctcatgctgtgatag gcatggtagtgagggaccccagggtactcagacctcctgttagaaccatggtggagtcagacatttatgagaactcctgt tctggtatcacacaaaaccagctgacaccagagattgcatcatcatccatatgggacagaaatatcagggactgtgtcaa aacaacaaagatgacagatctcaagctgcatcagatcaggtcacagcagcttgttccaggttcacccttagatttgggca aagatgagtcaagaattcccatcatgttggtacagaatccaggttgtctaccaaatgttgatatgtcacaagcaaaacta aactacggatcaggatgggatgtgatactaccagctggctggagcagggcattctggattgcatttatttataactgtac acatgcagtagggttacgtgagtcacagagcttagctcaggagcaacaggtgctccactcccctgaggattatcctgata caaaagctggccaatacagtcaactggaggtacaggaggggctaaaagcaaaacatgataaacggcctcctgctaaaaac cctaattatactaagcttggcagactctatccttttgattgtccatggcagcagcttttgaccgaatggagggaaagggt tgtaggttgtgatgataataactcagaaaatttttttgtgttgagaaataaatcggacttaaagttcctcaccaaatgtt ttagttcaaaaaatcagagaaatacaaaatcgatcagacagtcgaaacataagaaagccgaagatgtcagtcctgaaatg ataaatgatcaactgaatgaaatgatgagtcgtcacagaatggtgctagttcctgttagagttaccatggcaaccaaagg tgctcctgaagccatggcaaccgtttccataccaacagatgaagatttacagatgttacacagggacaattcttatagtg gtcctgaagagcaaattcatcaagacaaagtgaaacaagcaaaaaaagaacaaaagctccgagcaaaaaaactcaacatt caagtcagcaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngta aacaagctgaagtagaacagactacacaaaacgaaaccaaaatcttcagttcctgctcaaggaggatcatgggatactta agtcacgggggctttgctctgagtagtggtggagggtcgggtttgggattttgtgccctctcagggctggcggagctata ctcaattcaccaaaataatacagtactgataaggaatccgaagtcattcaagtatagatttgctcatatccagatcattt gttcatga |
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Protein
| Protein ID | pfu_aug2.0_655.1_17691.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_655.1_17691.t1 MDNNFRGQKRKREEEPDILCQAPREISVVQYAQSRASEIQALSQEVNKKNASSFVNTFIPRHMRRRAMSHNVKRFPRRIR DKLNVKGIQTKRPSRKYRRRPKNLLAEYNRRQRKHVWMETHIWHAKRFIMANKWGYRIPLHPTQKGTRAAYRATQRSCQI MDMSYLCCIEIVGIEENILQGLDHLTSLETGPTFRAKSYIRGLREGSLVLYHKDSYPYNAIGYVTFMWQPIIEQLSISNS QRTLWIWCHPSYYQEVWDELKFCYVSSENREAVNKYENLTREEDSVPLTLPSEPEKKNTTKTVVISAEKGTIGSYLKTAS ESVENDESSDKKQNGDSESANSPKFMSCSIGHVTLTSLKDCLVRHRLTGPRSRAILASVLRPSDIELDHLNSTEQACQVS VELESQSKKSTVWWQDYYSNPHHLSVYKAQRQFVERELYSCPTPSDVPPHAVIGMVVRDPRVLRPPVRTMVESDIYENSC SGITQNQLTPEIASSSIWDRNIRDCVKTTKMTDLKLHQIRSQQLVPGSPLDLGKDESRIPIMLVQNPGCLPNVDMSQAKL NYGSGWDVILPAGWSRAFWIAFIYNCTHAVGLRESQSLAQEQQVLHSPEDYPDTKAGQYSQLEVQEGLKAKHDKRPPAKN PNYTKLGRLYPFDCPWQQLLTEWRERVVGCDDNNSENFFVLRNKSDLKFLTKCFSSKNQRNTKSIRQSKHKKAEDVSPEM INDQLNEMMSRHRMVLVPVRVTMATKGAPEAMATVSIPTDEDLQMLHRDNSYSGPEEQIHQDKVKQAKKEQKLRAKKLNI QVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQAEVEQTTQNETKIFSSCSRRIMGYL SHGGFALSSGGGSGLGFCALSGLAELYSIHQNNTVLIRNPKSFKYRFAHIQIICS |
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