Gene
| Gene Model ID | pfu_aug2.0_660.1_01013 |
|---|---|
| Locus | scaffold660.1 : 31896 ... 54345 : - |
| To GenomeBrowser | scaffold660.1:31896..54345 |
| Genes list of scaffold | scaffold660.1 |
| Synonym | pfu_aug1.0_2993.1_30319 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_660.1_01013.t1 | 4 | 1 | DUF3827 | 266 | 434 | 3.7e-13 | 48.4 | 6.7e-16 | 2.0e-12 | 46.0 |
| pfu_aug2.0_660.1_01013.t1 | 4 | 2 | DUF3827 | 536 | 611 | 3.7e-13 | 48.4 | 0.15 | 460.0 | -1.4 |
| pfu_aug2.0_660.1_01013.t1 | 4 | 3 | DUF3827 | 663 | 686 | 3.7e-13 | 48.4 | 2.4e-05 | 0.073 | 11.1 |
| pfu_aug2.0_660.1_01013.t1 | 4 | 4 | DUF3827 | 829 | 863 | 3.7e-13 | 48.4 | 1.6 | 4800.0 | -4.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_660.1_01013.t1 | gi|260826526|ref|XP_002608216.1| | hypothetical protein BRAFLDRAFT_87867 [Branchiostoma floridae] | 1.0e-19 |
| pfu_aug2.0_660.1_01013.t1 | gi|390350476|ref|XP_003727422.1| | 1.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_660.1_01013.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_660.1_01013.t1 atgtcaacagaaccccaatcaagccctgtcattgcgtcatcattatccgaattttcgtctgtatctatggtaaccacatt ttcatcaaatttgccattttcagccagtacaacgtcatcaagtttggtaactagcataatttctcttcaatcgagtgaag cttctagtcagttaagttctccagtgcctggtcaaacatctgtaatatcatcaaacaccgtcatcgaatctagaagtatc cccgctagtagcagtattagtacagtatcaccgtcgttttctgaaccattaagtacagtgatgccatctgtgcctttgca aagtgccacatcgggaatttcgggcagctctgttcaatctagtgcctctctcagtactggtgcaccaacaatgatctctg tggtctcgagcatggaagcgtcgtcgtcgttatcagtacctgtagacgttcagtccaccattttgcctagctccacagaa tcatccatccctatgtcaacatcagcagcagtagtgcaaaccgtatctagttcagtattagccttagtatccgataattc cagtatgctactttcaattacgccaacagtagaaatttccacatcagcttcagttttcccaatagatacatcgctgattt ctataacagaatcagttactatggtttcgagtgctgttaatacaaccgacttgacaaatgcaacgtctgcaacgataagt actgttccaacatcatcagctgttccagtaaccactcctgtccctacaacaacacagcagccgacaaccactgagaacgt cgtggcaacctactggatagctattgtgttgaaagttccgacgaatgtagatgtttccatgtattctgagtttgctaaca ctacagaggttaatctggcagaattatacggtgtggcgtatcaaagacaggaggatatagctagcggtaactttactcca ctcaggagaaggaagaaaagatacaccacacctgatggattcacagcacagattaataacataaccaggacagctaacac tggtaacgttacagtggggtatacagtacagaagaacggcacattgataccggcctcccaggcgacctccacgctcggct tactcagtgatcaggaaatggcaatcaaactcggatatgtcgtagcaaagaaaccttcaccttatgtagaggagccaatg gttactatagtgcctgatgactcccctaacaacctgtggattgtgggcgtggccgtgggagggatagtactcatcctcat tgttatctgggtcatcttctgctgcattgtcaagtcaaagagggcgccacctgatgatgagaaacaagggcagccaactc tctataaaatgaaggaaaagggagatacagagagggaatctatggggactgtaggagaaagtgcatctggacataaggtc aaatcgtcaaagcggcagtcatatgaagtaacttcagagaatgatcagctgtacacagaggtcaaaaggcctaaaggtca tcatgcgagagaaggatcttctgctggagagtctgttaccatggaaacagaagatgttgaccttttaccctctcctaaaa agggaaagaagaaaaagaagaggccaggtgatggaaatatagaaaaagctcatcacacaaaatctggtaatatgtcccat cccataccggagacaggccagtattctgctgaggaagaggaggaacttcataatagaagagaagcagaaagaaagaaaaa taaacaaaggattagagaaaaaagaaagaaggaaaaagcaaagaaagatgatactgggggtgatgatactatcaagcggt atttagccgtacaggaagaaatagaccaggtacttgatgccccacccccagaaggagagatccctgatgtgttcaaaaca aaatcaaggaaaagatcaaagaaaaaaggtgataaagatggtgaagataatgaaggctttgaagaagagccactaacaga ggccaagaaacgcatgcacaaacttttagacgatgcttttgctctgatctctccaacattgtcaggagcggagaatgacg atagcggctctaactgtgatgcacggagtacggggaataaatcccctatagctcggctaaaggacagtatagaggcttgt aggatagttaccatgaattatggaatttttcacaccagaaaacttttattctttttgaaatcccaacaaacttcccttgg caatggtgatgggaaaagtgggcgtcgacctgtagccagcctaacagaaaatgtgccaaagtcaaaaatgaccactgatc caccaaagcctatcatactgaggactagagagttgatcaaggaggggcaggaagtcagaaagtcaggacagaattttgta gactcatcaaaaccgtatctaaacaatggatttggtacgcatggagaaggtaccattgataacttaaaatcaagtcatat aggcagtagagataaaaaatcatccaaaaaaagtgctagtggtgtagaaatgaggtcgttgaacggtgatctgttagcta ataaagtatcgcaaaaacaccaggctccaaacaaaaggactccacagggagaggacgtcacagatgttgtctccaagagt atacacgcaggtcagacgcctgatcaaacaataaggtccgtacgtaacgaactacaaggaatgacacacactgataccgg tacaccagtggtgaatacaagtgctagtaggaaaggcaggcctccttctggagctcttgttgaaattgcatga |
|
Protein
| Protein ID | pfu_aug2.0_660.1_01013.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_660.1_01013.t1 MSTEPQSSPVIASSLSEFSSVSMVTTFSSNLPFSASTTSSSLVTSIISLQSSEASSQLSSPVPGQTSVISSNTVIESRSI PASSSISTVSPSFSEPLSTVMPSVPLQSATSGISGSSVQSSASLSTGAPTMISVVSSMEASSSLSVPVDVQSTILPSSTE SSIPMSTSAAVVQTVSSSVLALVSDNSSMLLSITPTVEISTSASVFPIDTSLISITESVTMVSSAVNTTDLTNATSATIS TVPTSSAVPVTTPVPTTTQQPTTTENVVATYWIAIVLKVPTNVDVSMYSEFANTTEVNLAELYGVAYQRQEDIASGNFTP LRRRKKRYTTPDGFTAQINNITRTANTGNVTVGYTVQKNGTLIPASQATSTLGLLSDQEMAIKLGYVVAKKPSPYVEEPM VTIVPDDSPNNLWIVGVAVGGIVLILIVIWVIFCCIVKSKRAPPDDEKQGQPTLYKMKEKGDTERESMGTVGESASGHKV KSSKRQSYEVTSENDQLYTEVKRPKGHHAREGSSAGESVTMETEDVDLLPSPKKGKKKKKRPGDGNIEKAHHTKSGNMSH PIPETGQYSAEEEEELHNRREAERKKNKQRIREKRKKEKAKKDDTGGDDTIKRYLAVQEEIDQVLDAPPPEGEIPDVFKT KSRKRSKKKGDKDGEDNEGFEEEPLTEAKKRMHKLLDDAFALISPTLSGAENDDSGSNCDARSTGNKSPIARLKDSIEAC RIVTMNYGIFHTRKLLFFLKSQQTSLGNGDGKSGRRPVASLTENVPKSKMTTDPPKPIILRTRELIKEGQEVRKSGQNFV DSSKPYLNNGFGTHGEGTIDNLKSSHIGSRDKKSSKKSASGVEMRSLNGDLLANKVSQKHQAPNKRTPQGEDVTDVVSKS IHAGQTPDQTIRSVRNELQGMTHTDTGTPVVNTSASRKGRPPSGALVEIA |
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