Gene
| Gene Model ID | pfu_aug2.0_666.1_21041 |
|---|---|
| Locus | scaffold666.1 : 231878 ... 234616 : + |
| To GenomeBrowser | scaffold666.1:231878..234616 |
| Genes list of scaffold | scaffold666.1 |
| Synonym | pfu_aug1.0_5106.1_38064 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_666.1_21041.t1 | 2 | 1 | zf-RING_5 | 7 | 10 | 6.3e-07 | 29.0 | 6.7 | 7700.0 | -3.3 |
| pfu_aug2.0_666.1_21041.t1 | 2 | 1 | zf-C3HC4_2 | 7 | 10 | 8.1e-07 | 28.9 | 6.3 | 7200.0 | -2.9 |
| pfu_aug2.0_666.1_21041.t1 | 2 | 1 | zf-C3HC4 | 8 | 10 | 1.0e-05 | 25.0 | 7.6 | 8600.0 | -3.5 |
| pfu_aug2.0_666.1_21041.t1 | 2 | 1 | zf-RING_2 | 10 | 11 | 8.1e-13 | 47.9 | 5.3 | 6100.0 | -2.9 |
| pfu_aug2.0_666.1_21041.t1 | 2 | 2 | zf-RING_2 | 58 | 101 | 8.1e-13 | 47.9 | 7.1e-16 | 8.1e-13 | 47.9 |
| pfu_aug2.0_666.1_21041.t1 | 2 | 2 | zf-RING_5 | 59 | 101 | 6.3e-07 | 29.0 | 5.6e-10 | 6.3e-07 | 29.0 |
| pfu_aug2.0_666.1_21041.t1 | 2 | 2 | zf-C3HC4_2 | 59 | 100 | 8.1e-07 | 28.9 | 7.1e-10 | 8.1e-07 | 28.9 |
| pfu_aug2.0_666.1_21041.t1 | 2 | 2 | zf-C3HC4 | 59 | 100 | 1.0e-05 | 25.0 | 9.0e-09 | 1.0e-05 | 25.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_666.1_21041.t1 | gi|470660411|ref|XP_004331784.1| | PREDICTED: RING finger protein 32-like, partial [Tursiops truncatus] | 1.0e-06 |
| pfu_aug2.0_666.1_21041.t1 | gi|589968580|ref|XP_006996779.1| | PREDICTED: RING finger protein 32 [Peromyscus maniculatus bairdii] | 1.0e-06 |
| pfu_aug2.0_666.1_21041.t1 | gi|118362976|ref|XP_001014738.1| | anaphase-promoting complex subunit 11 RING-H2 finger protein [Tetrahymena thermophila SB210] | 2.0e-06 |
| pfu_aug2.0_666.1_21041.t1 | gi|729341093|ref|XP_010540113.1| | PREDICTED: RING-H2 finger protein ATL3-like [Tarenaya hassleriana] | 4.0e-06 |
| pfu_aug2.0_666.1_21041.t1 | gi|694925210|ref|XP_009442661.1| | PREDICTED: RING finger protein 32 isoform X2 [Pan troglodytes] | 4.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_666.1_21041.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_666.1_21041.t1 atgacgttactctccgtgtgtatggtgtgtactattgtgtgtggtgttgcatgtagacagtcacttcaagagacagatgg aagaaaggggagagtatctagaggggctctatatgtagtgtccaccattggtatgacaggaaaactgactttgttgaagc aaaaaggtacggactgcccaatatgctgggaagagctcacttcggacagccaagccaaactgagctgtaaccatgttttt cacaagaagtgtattgatttacacttcaaagtcaattctccgttatcatgtccctactgtagagccacaccccttgtatt cccaggaccggagagaataaagtcggatatccgattggtggcattttggatatcctcctcctttcgttgccatgggcgac aacctccggacaacgcccagcctgagtgggtgtga |
|
Protein
| Protein ID | pfu_aug2.0_666.1_21041.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_666.1_21041.t1 MTLLSVCMVCTIVCGVACRQSLQETDGRKGRVSRGALYVVSTIGMTGKLTLLKQKGTDCPICWEELTSDSQAKLSCNHVF HKKCIDLHFKVNSPLSCPYCRATPLVFPGPERIKSDIRLVAFWISSSFRCHGRQPPDNAQPEWV |
|