Gene
| Gene Model ID | pfu_aug2.0_67.1_23354 |
|---|---|
| Locus | scaffold67.1 : 9789 ... 15955 : - |
| To GenomeBrowser | scaffold67.1:9789..15955 |
| Genes list of scaffold | scaffold67.1 |
| Synonym | pfu_aug1.0_7020.1_45556 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_67.1_23354.t1 | 2 | 1 | LSM | 151 | 173 | 3.9e-06 | 26.3 | 1.1e-05 | 0.17 | 11.4 |
| pfu_aug2.0_67.1_23354.t1 | 2 | 2 | LSM | 309 | 337 | 3.9e-06 | 26.3 | 6.4e-06 | 0.095 | 12.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_67.1_23354.t1 | gi|676496785|ref|XP_009067328.1| | hypothetical protein LOTGIDRAFT_170438 [Lottia gigantea] | 6.0e-35 |
| pfu_aug2.0_67.1_23354.t1 | gi|597741659|ref|XP_007232957.1| | PREDICTED: U7 snRNA-associated Sm-like protein LSm11 [Astyanax mexicanus] | 1.0e-34 |
| pfu_aug2.0_67.1_23354.t1 | gi|348516890|ref|XP_003445970.1| | PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Oreochromis niloticus] | 1.0e-31 |
| pfu_aug2.0_67.1_23354.t1 | gi|742242994|ref|XP_010862993.1| | PREDICTED: U7 snRNA-associated Sm-like protein LSm11 [Esox lucius] | 2.0e-31 |
| pfu_aug2.0_67.1_23354.t1 | gi|498936403|ref|XP_004541162.1| | PREDICTED: U7 snRNA-associated Sm-like protein LSm11 [Maylandia zebra] | 4.0e-31 |
Transcript
| Transcript ID | pfu_aug2.0_67.1_23354.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_67.1_23354.t1 atggctgcgcccatggatgagagtccggggaattcgaaagggaaaagatacgacgaagaacttgatataatgtcaccaaa ttttaaaccaattaaagcactgtattcagaagatgaaattgatttaccatctaaagatgtcacacaatttaacaatattg ccgaatatgaaagctttatgaagaggaaagacagaggaaatccaggaaatgtctcgcagcctaaagatacagaggttcct aagaagaaatcgtcatcgggtcataccaaaacaaaggaaatgtcttctttccaagatgaatacttgagaaaaaggagaga aaggatgaatcgcaatgttttgacaagaatggagacacttgagaagggtccattaagcctcctcaggagatgtgtacagg acaaacttcttgttaaagtgtggacaaggggagcagtggaactgagaagaatgtgtaagggatatattgtggcatttgat aagcactttaacttggctatgattgatgtagatgaattgtttagatgtccacttacaagagatattaacataaaaaaagc tgcaaaggcagaaaaaagatatgtgaagtatatgaagaagaaactttccaaaaagacaaatgaaaatgtttcagaaactt taagtattgtgcaaaatacttgcccagtgtctcaaaaaagccaaacctctacggacaaccagaagggctcagaacccata gataatactgttgttacagataacgcagatgtctgctcaagtgataatacggcctctacctcttcatctatctcacaaca gacaagaacgaaaacccaagatacagatactactgttacttatacagcagaagaaacattaaatcaaaaaggtttacagg aaaaagttatttctgaggcagactgtgaaacgcaagatgacggtgctacggaacagaaatcaggtgctataagtttactc gaaagacatgtgaatcagctgtttatcaggggagataatgttgtttctgttgccattttagattaa |
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Protein
| Protein ID | pfu_aug2.0_67.1_23354.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_67.1_23354.t1 MAAPMDESPGNSKGKRYDEELDIMSPNFKPIKALYSEDEIDLPSKDVTQFNNIAEYESFMKRKDRGNPGNVSQPKDTEVP KKKSSSGHTKTKEMSSFQDEYLRKRRERMNRNVLTRMETLEKGPLSLLRRCVQDKLLVKVWTRGAVELRRMCKGYIVAFD KHFNLAMIDVDELFRCPLTRDINIKKAAKAEKRYVKYMKKKLSKKTNENVSETLSIVQNTCPVSQKSQTSTDNQKGSEPI DNTVVTDNADVCSSDNTASTSSSISQQTRTKTQDTDTTVTYTAEETLNQKGLQEKVISEADCETQDDGATEQKSGAISLL ERHVNQLFIRGDNVVSVAILD |
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