Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_670.1_01031
Locus scaffold670.1 : 216270 ... 227310 : +
To GenomeBrowser scaffold670.1:216270..227310
Genes list of scaffold scaffold670.1
Synonym pfu_aug1.0_67759.1_05795

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_670.1_01031.t1 2 1 ANF_receptor 88 447 1.7e-32 112.5 5.3e-36 2.0e-32 112.3
pfu_aug2.0_670.1_01031.t1 1 1 Peripla_BP_6 138 310 2.1e-09 37.2 9.2e-13 3.4e-09 36.5
pfu_aug2.0_670.1_01031.t1 2 2 ANF_receptor 526 625 1.7e-32 112.5 0.018 67.0 2.0
pfu_aug2.0_670.1_01031.t1 1 1 7tm_3 772 1036 4.7e-34 117.7 1.9e-37 7.0e-34 117.2

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_670.1_01031.t1 gi|524865102|ref|XP_005089383.1| PREDICTED: metabotropic glutamate receptor 2-like isoform X3 [Aplysia californica] 0.0
pfu_aug2.0_670.1_01031.t1 gi|524865100|ref|XP_005089382.1| PREDICTED: metabotropic glutamate receptor 2-like isoform X2 [Aplysia californica] 0.0
pfu_aug2.0_670.1_01031.t1 gi|524865098|ref|XP_005089381.1| PREDICTED: metabotropic glutamate receptor 2-like isoform X1 [Aplysia californica] 0.0
pfu_aug2.0_670.1_01031.t1 gi|157110901|ref|XP_001651300.1| AAEL000818-PA [Aedes aegypti] 1.4013e-45
pfu_aug2.0_670.1_01031.t1 gi|242009840|ref|XP_002425690.1| class C metabotropic glutamate-like G-protein coupled receptor GPRmgl4, putative [Pediculus humanus corporis] 1.4013e-45

Transcript
Transcript IDpfu_aug2.0_670.1_01031.t1
Definition-
>pfu_aug2.0_670.1_01031.t1
atggtgatgcggtggagtgtggtggccttgacggtcattgtcagcttgaccacagcacaggatatctgtccagccaaaga
cgcagcgtgtgtgtacaacaacatcgctatagagtacgccaccaacaaccaacctaacactcactattacctgggaggtt
tgtttggtgttcatgagagagcaggagattcctactcctgcgactcatcacagtacagggatcgtggaatgatcaacctg
gaggctttcatgtgggcggtacgaaaatacaggaacataaatacaaacatatctataggagcatttgccctcgactcctg
ttcaaggcctgagcagacgatagaaaacgtgttgagttttgagacatgtaaagttccgttgggctctggggtcaatgcac
cctcgccgcgtaatgtactagcatatataggtccagatacaagcagcgatgccatgtcatctgccgctttgctgaaagac
atgaataaaactcagatcagccattctgccacctcaacaatgctttctaacaataatatgtactctttcttccttagaac
tgtaccgagtgacctgtttgatttcaaggcaatcgcatccctgatcgtgcggctgaatacaaagtacgtactgaccgttt
acactgacaatgcgtatggtcgcgatggattcagagctttccaggaagaaactagagctcacaatatctgtattgtacac
agtgttgaaatctcgtctgatgctaacactgacctgagcagtatgacggccgccttagttgccaggaagtctgtacgcta
tgtagttctcattgcaacagctacacatgcacggaagatattaacagacatcaatacacaggacccagtggagttccgca
acttcatcatgattggtacatcatcatggacaccttccgttgttgataaccttgatcttacagcatatcacacgggactt
ccggctccagatgattttgtccaagatacgaacgacttctatgcttacttggatcagctcacccaatctcaaaattattg
gaacaccaaatggttcagtgaatttagagaccagaagcatggatgcaatgttcttacaaacccatgtaacacaagcttta
cccttagaggcagatacgaacgtgatccatttgtgcctttcactctagccgcagttcgtgccgccattattggaatccag
gatggcgccaacactcattgtaataccaaagacctgtgttccagctatttgaataacataaatcgtggtcagtacatcaa
cgatggaatcatcaatgcacaacttggaaataagagatttttcgacaacagcggtgatgcatctgtggatctgacaaaat
atgtcgtttaccgggtggatggtggcgctgggcagacgaccgcatcagaacaggttgctagctacagtcctgccacaggt
ctagtcgtaccagaccccgggaagcttgctatcctttcatcattctgccctaattccccctgccatgattttgtccaaga
tacgaacgacttctatacttacttggatgggctcacccaatctcaaaattattggaacaccaaatggttcaaagaattta
gagaccagaagcatggatgcaatgttcttacaaacccatgtaacacaagctttacccttagaggcagatacgaacgtgat
ccatttgtgcctttcactctagccgcagttcgtgccgctattattggaatccaggatggcgccaacactcattgtaatac
caaagacctgtgttccagctatttgaataacataaatcgtggtcagtacatcaacgatggaatcatcaatgcacaacttg
gaaataagagatttttcgacaacagcggtgatgcatctgtggatctgacaaaatacgttgtttacagggtggatggtggc
gctgggcagacgactgcatcggaacaggttgctagctacagtcctgccacaggtctagtcgtaccagaccctgggaagct
tgctatcctttcatcattctgccctaattccccctgccgtgagtgtggagaggtccctccctccacaagtacggctgcac
ccatcaccacaacccctgagccaatgaggagcaccattgaccccacagctggcggcgacttccggtctgtgcggttcctc
cagaattacacattcactggagcatatgatgcctcgtcaatcaaccgtgacatgacccatatgtatgctgatggaatcat
ggatttcgtgaaatctggcacccgctttgctattggacagaactggatcattgcactaggtgttcttgcgggtttggggg
tactctcagtcattatctttgaggtctacatcttgtacaagctattagggacaaggatcggacgtcagtggcgcaccatg
tggctgggacagttgttgctgtttggaattttcttgtcatatttaacactctttgcttatttgcctattcccaccaatgc
tacatgtggaataacgaggtttggagtgggactttgttatgctattatgtttgccgtacttttagtcaaactgatggtca
tcttaacatcaaaatcctcaggggaagcacttctagcaggtgacattgaatcaccaaactatttgaaaggaatttaccaa
ttcctcatgtttatttttgccgttggcgttcaggttgttatcaatgtgcaatggttgattcaggtgccaccgtatgccat
cctagtaaccacaaacactggggagaaagcttggatatgcaatcactacacatgggaggcaaaattcggttggactgact
tgggcaactttgttcgcacaccatttgagaaccatcttttatcgctcatttacataatggcactaattctcatgacaacg
attgttgccatgaaagcacacggtatcatcaccaatcatagggaaagcgtatttattggaattgctgccggatttagtat
tccggtttggattgcttggggccttgtagggggactgaacagagaggaagattacgctcaagaatacggggatgcttgta
tggcgtttgggctctttgtcaccgccacactttgcctgtttgccatgttcctgcctaaagtccgccagttagttaacatg
ggagtggaagggatctatttagaggatgaccgtgacacgtactatgcaggatctgtggtgatgggaaatggtgatcctaa
tcatttgaagcatcaaggaagtatgtacagcggacatagcgcacctgtttacacgaagcgaagcgactttggcagcagca
aggtactaaaagtaacgggtgatctaaccggtaaacacccgacagaacgacgacgccctgtctcggaggtggcttacggg
ggttatgctgggtcatacagaaaaacgagatcagagagcggtggtactttaagaaaatctcgatcccaaacagatttagg
agctttgtga

Protein
Protein IDpfu_aug2.0_670.1_01031.t1
Definition-
>pfu_aug2.0_670.1_01031.t1
MVMRWSVVALTVIVSLTTAQDICPAKDAACVYNNIAIEYATNNQPNTHYYLGGLFGVHERAGDSYSCDSSQYRDRGMINL
EAFMWAVRKYRNINTNISIGAFALDSCSRPEQTIENVLSFETCKVPLGSGVNAPSPRNVLAYIGPDTSSDAMSSAALLKD
MNKTQISHSATSTMLSNNNMYSFFLRTVPSDLFDFKAIASLIVRLNTKYVLTVYTDNAYGRDGFRAFQEETRAHNICIVH
SVEISSDANTDLSSMTAALVARKSVRYVVLIATATHARKILTDINTQDPVEFRNFIMIGTSSWTPSVVDNLDLTAYHTGL
PAPDDFVQDTNDFYAYLDQLTQSQNYWNTKWFSEFRDQKHGCNVLTNPCNTSFTLRGRYERDPFVPFTLAAVRAAIIGIQ
DGANTHCNTKDLCSSYLNNINRGQYINDGIINAQLGNKRFFDNSGDASVDLTKYVVYRVDGGAGQTTASEQVASYSPATG
LVVPDPGKLAILSSFCPNSPCHDFVQDTNDFYTYLDGLTQSQNYWNTKWFKEFRDQKHGCNVLTNPCNTSFTLRGRYERD
PFVPFTLAAVRAAIIGIQDGANTHCNTKDLCSSYLNNINRGQYINDGIINAQLGNKRFFDNSGDASVDLTKYVVYRVDGG
AGQTTASEQVASYSPATGLVVPDPGKLAILSSFCPNSPCRECGEVPPSTSTAAPITTTPEPMRSTIDPTAGGDFRSVRFL
QNYTFTGAYDASSINRDMTHMYADGIMDFVKSGTRFAIGQNWIIALGVLAGLGVLSVIIFEVYILYKLLGTRIGRQWRTM
WLGQLLLFGIFLSYLTLFAYLPIPTNATCGITRFGVGLCYAIMFAVLLVKLMVILTSKSSGEALLAGDIESPNYLKGIYQ
FLMFIFAVGVQVVINVQWLIQVPPYAILVTTNTGEKAWICNHYTWEAKFGWTDLGNFVRTPFENHLLSLIYIMALILMTT
IVAMKAHGIITNHRESVFIGIAAGFSIPVWIAWGLVGGLNREEDYAQEYGDACMAFGLFVTATLCLFAMFLPKVRQLVNM
GVEGIYLEDDRDTYYAGSVVMGNGDPNHLKHQGSMYSGHSAPVYTKRSDFGSSKVLKVTGDLTGKHPTERRRPVSEVAYG
GYAGSYRKTRSESGGTLRKSRSQTDLGAL

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495