Gene
Gene Model ID | pfu_aug2.0_671.1_04468 |
---|---|
Locus | scaffold671.1 : 134866 ... 141564 : + |
To GenomeBrowser | scaffold671.1:134866..141564 |
Genes list of scaffold | scaffold671.1 |
Synonym | pfu_aug1.0_10345.1_39032 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_671.1_04468.t1 | 2 | 1 | C1q | 65 | 183 | 1.90002e-41 | 140.9 | 1.4e-22 | 1.2e-19 | 70.4 |
pfu_aug2.0_671.1_04468.t1 | 2 | 2 | C1q | 249 | 371 | 1.90002e-41 | 140.9 | 2.6e-23 | 2.2e-20 | 72.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_671.1_04468.t1 | gi|657572667|ref|XP_008289959.1| | PREDICTED: uncharacterized protein LOC103364585 [Stegastes partitus] | 7.0e-17 |
pfu_aug2.0_671.1_04468.t1 | gi|734650769|ref|XP_010754725.1| | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104939882 [Larimichthys crocea] | 2.0e-12 |
pfu_aug2.0_671.1_04468.t1 | gi|543255787|ref|XP_005419527.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 [Geospiza fortis] | 1.0e-11 |
Transcript
Transcript ID | pfu_aug2.0_671.1_04468.t1 |
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Definition | - |
>pfu_aug2.0_671.1_04468.t1 atgatggaacgtacagaaacgggatgggtatctttaaatccgaatgacattgaaagaagattggaaaagctcgaatcttc ccttactagggctcaagaaagaatatctacattggaaggaaaaggtattaatttgtacttcatagttgaaaatcttattt cagccaacaattccacccaccatatggttggtttcacagcttgccattctaaaggatctactttcgctgcacatcagacg atcatatacgatcatatcataacaaacatcggaaacgcttacgatgtcagggatggagagttcaacgtgccatatgatgg actatacacattcaccgtcacaggaatggcatactccaatactgaaatgtactttactttattgaaaaatggcgtctacg ttcagaagatgtatagtaatttagacaccagcgacacctctgcctttaccacgaatctttatcttcaagccggtgacgca atttgggtagtcaatggcgggcatgattctggacatcttcatcctaataattataattgcttctccgggatagaggatgg attatgtattggaaagagactactcatggaagaaaatgatgttgaatcgaaactgacgcagattgaatctatgtttgcgt catgcaatgctacaatttcaactctaaagaaagagcaatcaaaatcactggaaaggatatccactctggaaggaaaagtc aacaattcgacccagcatatggtagctttcacagcttgccattctaaaggttctacaattggcgttcaccagaccgtact ctatgaccacgtcattacaaacatcggaaacgcttacgacgtcagggatggagaattcaacgtgccgtatgatggacttt atacgttttccatcacaggaatggcatacgggaatactgacatgtatcttactctatttaaaaatggtgtctacgttcaa aaactgtacagtaatattggaaatgcagactcttcctcctttactacgcatctttatcttcaagctggtgatgaaatttg ggtagtcaatggcggacctaccagtgaccaacttcatcctggaaattataattgtttttctggaattcttgttaaggaaa agcattga |
Protein
Protein ID | pfu_aug2.0_671.1_04468.t1 |
---|---|
Definition | - |
>pfu_aug2.0_671.1_04468.t1 MMERTETGWVSLNPNDIERRLEKLESSLTRAQERISTLEGKGINLYFIVENLISANNSTHHMVGFTACHSKGSTFAAHQT IIYDHIITNIGNAYDVRDGEFNVPYDGLYTFTVTGMAYSNTEMYFTLLKNGVYVQKMYSNLDTSDTSAFTTNLYLQAGDA IWVVNGGHDSGHLHPNNYNCFSGIEDGLCIGKRLLMEENDVESKLTQIESMFASCNATISTLKKEQSKSLERISTLEGKV NNSTQHMVAFTACHSKGSTIGVHQTVLYDHVITNIGNAYDVRDGEFNVPYDGLYTFSITGMAYGNTDMYLTLFKNGVYVQ KLYSNIGNADSSSFTTHLYLQAGDEIWVVNGGPTSDQLHPGNYNCFSGILVKEKH |