Gene
| Gene Model ID | pfu_aug2.0_672.1_07790 |
|---|---|
| Locus | scaffold672.1 : 249919 ... 257525 : - |
| To GenomeBrowser | scaffold672.1:249919..257525 |
| Genes list of scaffold | scaffold672.1 |
| Synonym | pfu_aug1.0_7916.1_67764 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_672.1_07790.t1 | 5 | 1 | WD40 | 1 | 13 | 2.2e-11 | 43.1 | 0.0067 | 99.0 | 3.0 |
| pfu_aug2.0_672.1_07790.t1 | 5 | 2 | WD40 | 18 | 31 | 2.2e-11 | 43.1 | 0.0044 | 66.0 | 3.6 |
| pfu_aug2.0_672.1_07790.t1 | 5 | 3 | WD40 | 69 | 94 | 2.2e-11 | 43.1 | 0.0016 | 24.0 | 4.9 |
| pfu_aug2.0_672.1_07790.t1 | 5 | 4 | WD40 | 123 | 151 | 2.2e-11 | 43.1 | 6.8e-09 | 0.0001 | 22.0 |
| pfu_aug2.0_672.1_07790.t1 | 5 | 5 | WD40 | 169 | 186 | 2.2e-11 | 43.1 | 0.00013 | 1.9 | 8.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_672.1_07790.t1 | gi|585704683|ref|XP_006823495.1| | PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_672.1_07790.t1 | gi|678005686|ref|XP_009079187.1| | PREDICTED: U3 small nucleolar RNA-interacting protein 2, partial [Acanthisitta chloris] | 0.0 |
| pfu_aug2.0_672.1_07790.t1 | gi|260804817|ref|XP_002597284.1| | hypothetical protein BRAFLDRAFT_203365 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_672.1_07790.t1 | gi|72063080|ref|XP_787944.1| | PREDICTED: U3 small nucleolar RNA-interacting protein 2 isoform X2 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_672.1_07790.t1 | gi|683938212|ref|XP_009097790.1| | PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Serinus canaria] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_672.1_07790.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_672.1_07790.t1 gcgtctggtgataggaacaaactgatcttcatatggaatccagacacattagagttgatacacaagtttacaggccacag agatgctgtttcttttttctcaacttcgatcgtgtggcccaacatcaaccgtctcgtgtgcacgtgtgttgagattgttt ataagtttatcggctatactgtaccacgtgacacgatccttggttcaatagactgtgtagccctgatcaacgaatccaac tttatctctggtgctgataacaattctctagcattgtggagtctaatgaaaaagaagccgatagcgatgtgtaaaaacgc tcacggtagatctacagatgagaaccataatggtgacaagagtgaagaaaactggataacggcagtggcagcattcacta acactgatctagtggcctcaggttccaaagatggacaaatcagactatggaaatgtgccaatgatttcaaatctctcaaa cctgtgttatgtatacctgtgatgggttttgtcaatagtttacaattttcccaagatggcacgatgttggtagctggagt tggtcaagaacacaagctgggaagatggtggagacttaaacaagccaaaaatagcactgtaataatcaaacttggaaaaa agactgaataa |
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Protein
| Protein ID | pfu_aug2.0_672.1_07790.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_672.1_07790.t1 ASGDRNKLIFIWNPDTLELIHKFTGHRDAVSFFSTSIVWPNINRLVCTCVEIVYKFIGYTVPRDTILGSIDCVALINESN FISGADNNSLALWSLMKKKPIAMCKNAHGRSTDENHNGDKSEENWITAVAAFTNTDLVASGSKDGQIRLWKCANDFKSLK PVLCIPVMGFVNSLQFSQDGTMLVAGVGQEHKLGRWWRLKQAKNSTVIIKLGKKTE |
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