Gene
| Gene Model ID | pfu_aug2.0_6760.1_02875 |
|---|---|
| Locus | scaffold6760.1 : 1 ... 11415 : - |
| To GenomeBrowser | scaffold6760.1:1..11415 |
| Genes list of scaffold | scaffold6760.1 |
| Synonym | pfu_aug1.0_25206.1_11675 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pre-mrna-splicing factor rbm22-like | GO:0000060 GO:0000166 GO:0005487 GO:0005654 GO:0005737 GO:0017069 GO:0033120 GO:0035690 GO:0036002 GO:0044822 GO:0045292 GO:0046872 GO:0048306 GO:0071013 GO:0090316 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_6760.1_02875.t1 | 1 | 1 | RRM_1 | 165 | 229 | 1.1e-14 | 53.7 | 9.0e-18 | 1.9e-14 | 53.0 |
| pfu_aug2.0_6760.1_02875.t1 | 1 | 1 | RRM_6 | 165 | 230 | 1.2e-11 | 44.3 | 1.0e-14 | 2.1e-11 | 43.6 |
| pfu_aug2.0_6760.1_02875.t1 | 1 | 1 | RRM_5 | 179 | 233 | 1.2e-10 | 41.0 | 8.9e-14 | 1.9e-10 | 40.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_6760.1_02875.t1 | gi|291243067|ref|XP_002741428.1| | PREDICTED: pre-mRNA-splicing factor RBM22-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_6760.1_02875.t1 | gi|524906382|ref|XP_005108504.1| | PREDICTED: pre-mRNA-splicing factor RBM22-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_6760.1_02875.t1 | gi|260830806|ref|XP_002610351.1| | hypothetical protein BRAFLDRAFT_145268 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_6760.1_02875.t1 | gi|585179311|ref|XP_006741337.1| | PREDICTED: pre-mRNA-splicing factor RBM22 [Leptonychotes weddellii] | 0.0 |
| pfu_aug2.0_6760.1_02875.t1 | gi|632979257|ref|XP_007906370.1| | PREDICTED: pre-mRNA-splicing factor RBM22 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_6760.1_02875.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_6760.1_02875.t1 atgatggtccgacttgcagacccacgacggtgttatctgttttttcgtcttcgaagacaatcatgtttacctgtacaggt cagggatcatgcattaaaagttcaagacacaatgccaaagtctgacgtcaacaaggaatactacacacagaatatggaaa gagaaataggcaacagtgacggtataagtgccgtgggagcactaggtaaagcccaggcccccagtgatatgctcttaaag ttagctaggaccacaccctactacaagagaaataggcctcacatctgctcattctgggtcaagggagagtgtaagagagg agaggagtgtccatacagacatgacaagccgacagatccggatgatccactggcggaccagaacataaaggatcgattct acggtacagatgatcctgtggccgagaagttactacggcgatacagcgatctacccaaactggagataccagaggataaa actataactactctttacgtggggaatctcggtgaaaaaattggtgaaacagaattaaaggatcatttctaccagtttgg tgagatacgttccataaacgtggtcagcaaacagcagtgtgcgtttgttcagtttacaacacgatcatcagcggagcaag ctgcggaaaagtctttcaacaagctgatcattggtgggaggagactgaatatcaagtggggcagatctcaaggtcagcag atggcagtaaagagggacggggaggaggacgaggccaagttagagcccgttcccggactcccaggag |
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Protein
| Protein ID | pfu_aug2.0_6760.1_02875.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_6760.1_02875.t1 MMVRLADPRRCYLFFRLRRQSCLPVQVRDHALKVQDTMPKSDVNKEYYTQNMEREIGNSDGISAVGALGKAQAPSDMLLK LARTTPYYKRNRPHICSFWVKGECKRGEECPYRHDKPTDPDDPLADQNIKDRFYGTDDPVAEKLLRRYSDLPKLEIPEDK TITTLYVGNLGEKIGETELKDHFYQFGEIRSINVVSKQQCAFVQFTTRSSAEQAAEKSFNKLIIGGRRLNIKWGRSQGQQ MAVKRDGEEDEAKLEPVPGLPG |
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