Gene
| Gene Model ID | pfu_aug2.0_68.1_26772 |
|---|---|
| Locus | scaffold68.1 : 40646 ... 60858 : + |
| To GenomeBrowser | scaffold68.1:40646..60858 |
| Genes list of scaffold | scaffold68.1 |
| Synonym | pfu_aug1.0_9538.1_46059 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_68.1_26772.t1 | 2 | 1 | La | 231 | 243 | 6.4e-25 | 86.7 | 0.14 | 2100.0 | -1.5 |
| pfu_aug2.0_68.1_26772.t1 | 2 | 2 | La | 356 | 412 | 6.4e-25 | 86.7 | 1.4e-28 | 2.1e-24 | 85.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_68.1_26772.t1 | gi|524898044|ref|XP_005105476.1| | PREDICTED: la-related protein 1-like isoform X4 [Aplysia californica] | 0.0 |
| pfu_aug2.0_68.1_26772.t1 | gi|260833404|ref|XP_002611647.1| | hypothetical protein BRAFLDRAFT_117120 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_68.1_26772.t1 | gi|524898042|ref|XP_005105475.1| | PREDICTED: la-related protein 1-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_68.1_26772.t1 | gi|524898038|ref|XP_005105473.1| | PREDICTED: la-related protein 1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_68.1_26772.t1 | gi|524898040|ref|XP_005105474.1| | PREDICTED: la-related protein 1-like isoform X2 [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_68.1_26772.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_68.1_26772.t1 atggctgctgcaagtgttagccctggaaattcatcgaaagagaatttcacagcagaaaatgaaactgtcaatacacagaa agttacccaagaccccattcaaccaaggcccaatccttggaaaaagctggatccgccccagcaacctactaaacctgttg ttgccaatgaaaatcaaccaaaagaaacggacaagcaagttaaaggagatcaacctgcaaaggagaaagggtctgataag gagaaagggtctgataaggatgaaaagacagaaaaagaccagaagaatgtaccaactgtgaaaaagtttgacaagaaaaa ctatgtagaggcacctttacccaaaaccaacccatggaacaagaacagttccagtaatactgttgtggcacctgcacctg tagctgtaaaagcagacttacccgaagcacctgtacagaaaccccaggtgaccaaacaacccacagaaccaacaaaggag gaagatgccacagagcagaagtcaggtcctttgagtgacgagaactggccagctctagctgaagttacagagagtacagg tccaaagaaacaagcactaatgaagtcggctccaaatcagcctcaaaccaattcagccaatcagatgacggctaacagtc aacaacaacaagcttcctcggattctgggggtgatgattctgcaaaggagaatcgggaaaattccaaacagaagtgggta cctctggacatagatcctcccaagtcaggccgcagaagtcgtagtcatggacgagctacaccgagacgtctggacaaaac caagtcagatgaaacaagaggatcagatagtaaaaattggcgagatgatatgagaccactaagtccgcgggagggtagag gtggtttccgtggttacagttaccgtggtagaggtggaagaggtagagggggacgtggtggtagaggtagaggcagggga atggagcataatgctgaaaacctgaccggcgttgtcaatcagggattcggcactgtcttcttcaacaccccagcttatgt tgacgatgctaccctcaaagattatataaagaaacaaattgagtattacttcagtgaagataatttacagagggattttt tcttgagacgtagaatggacaaggatggttggatacctataagtctaatcgcaagtttccatcgtgtacaagctttaaca caggatgttagcttaattatagagtccttacaaggcagtgacggtgtagacctgagcgaggacaaactgcgggttcgtgg gaagagtaatcccgccaagtggcctatagaaggaccacctgtaggactggctgttacctcaaatcttcatcctgatgtac cggagtttgttcccggcaaaatgtattcttttggttcccacttttcagatgactctgctgacacattcaaccaagggggt gatggggaggagaaggaggagttagattttatgtttgacgaggagatggataacttaaatatcggcagacagaaacagtt ctctgaatggtcggatgacgagtcagacaatgagatctcagacagtgatgtcaacaaaatcttaattgttacacagaccc cacccgcattccgtaaacatccccagggtgacaggacaggagaccacaccccaaggtcaaaaatcacagctgaaatgatg aagattatagatgatggattattctattatgaacaggatcttcatgaagaaatggaggtgccccctccacctcctcctcc tgtaacactacaaaacactgccaagaaaatacctagtcctccccctagtacagcaaatcaacaggaaatggctcgttctc tgccagccaatgtgccaaacaccccagggggatcacgtacaccgcggaacaggaaagatgacaaggctccacggttctat cctgtagtcaaaggttccacaggacccccggatcctcagactcctagaaagaagaagacgcgccattccaataaccctcc aatagagagccatataggctgggtgatggatgctagagagcacaggccggacagatctcgcaataattccatgtctcaaa ggtaa |
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Protein
| Protein ID | pfu_aug2.0_68.1_26772.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_68.1_26772.t1 MAAASVSPGNSSKENFTAENETVNTQKVTQDPIQPRPNPWKKLDPPQQPTKPVVANENQPKETDKQVKGDQPAKEKGSDK EKGSDKDEKTEKDQKNVPTVKKFDKKNYVEAPLPKTNPWNKNSSSNTVVAPAPVAVKADLPEAPVQKPQVTKQPTEPTKE EDATEQKSGPLSDENWPALAEVTESTGPKKQALMKSAPNQPQTNSANQMTANSQQQQASSDSGGDDSAKENRENSKQKWV PLDIDPPKSGRRSRSHGRATPRRLDKTKSDETRGSDSKNWRDDMRPLSPREGRGGFRGYSYRGRGGRGRGGRGGRGRGRG MEHNAENLTGVVNQGFGTVFFNTPAYVDDATLKDYIKKQIEYYFSEDNLQRDFFLRRRMDKDGWIPISLIASFHRVQALT QDVSLIIESLQGSDGVDLSEDKLRVRGKSNPAKWPIEGPPVGLAVTSNLHPDVPEFVPGKMYSFGSHFSDDSADTFNQGG DGEEKEELDFMFDEEMDNLNIGRQKQFSEWSDDESDNEISDSDVNKILIVTQTPPAFRKHPQGDRTGDHTPRSKITAEMM KIIDDGLFYYEQDLHEEMEVPPPPPPPVTLQNTAKKIPSPPPSTANQQEMARSLPANVPNTPGGSRTPRNRKDDKAPRFY PVVKGSTGPPDPQTPRKKKTRHSNNPPIESHIGWVMDAREHRPDRSRNNSMSQR |
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