Gene
| Gene Model ID | pfu_aug2.0_68.1_26778 |
|---|---|
| Locus | scaffold68.1 : 174587 ... 184965 : - |
| To GenomeBrowser | scaffold68.1:174587..184965 |
| Genes list of scaffold | scaffold68.1 |
| Synonym | pfu_aug1.0_408.1_50848 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_68.1_26778.t2 | 1 | 1 | RED_N | 88 | 220 | 1.4e-36 | 125.8 | 1.1e-39 | 2.8e-36 | 124.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_68.1_26778.t2 | gi|157154401|gb|ABV24915.1| | 0.0 | |
| pfu_aug2.0_68.1_26778.t2 | gi|41054589|ref|NP_955883.1| | protein Red [Danio rerio] | 0.0 |
| pfu_aug2.0_68.1_26778.t2 | gi|597748750|ref|XP_007236330.1| | PREDICTED: protein Red [Astyanax mexicanus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_68.1_26778.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_68.1_26778.t1 atgcctgaaagagagacagaggtgttctccaatcccctacctcctactgactttaacatcaatgatgaggatgatgaagg gcatgccttgaccaatgaggatttccgtaagatgttgatgacccctcgggtcacttcatcatcaacagcatcggcagtgg ctcctaaagcagtagctaaagtccctaaaagtgtaccagtcaaacaggaggaagaagatgatgatcctgccacgagaaga aagaagaaaaaaatgactatccaggtgagggcagaaataagttacaaagagagagaagaagaagaaacaatggaggaagt agtggataaaaaagaagaaaaagaagctgaaccagaggagcagattcagttcaaaaccaaaatggggaggaatatctacc ggactctgttcaagcagaaacagccggagaggaacgagctgttcttacctagacgtatggcgtatgtagtagacatcgag gatgaatttgccgacagtgatgttcccacaacaacaattcggagcaaggctgattgtccgacactcgaggctaatgccac tctgacaaccaatgatattgtcatcaacaaactgacacagatcttatcctacctcagacagggaaggcgagaaaacaaaa aactcaaaaagaaagaaaaaggtaaaataaaagaggaggataaggccagagagaagcttccaggagctgatatggatata tacacagacctggctgactataatccttactctaaatcatctaaggacaaaaaagagaagaaggatcgtgaccgagggga cgatcatagagaccgaggcagagacagggaccgaggcgatagggatagggagagggattataggtaa |
|
| Transcript ID | pfu_aug2.0_68.1_26778.t2 |
| Definition | - |
>pfu_aug2.0_68.1_26778.t2 atgcctgaaagagagacagaggtgttctccaatcccctacctcctactgactttaacatcaatgatgaggatgatgaagg gcatgccttgaccaatgaggatttccgtaagatgttgatgacccctcgggtcacttcatcatcaacagcatcggcagtgg ctcctaaagcagtagctaaagtccctaaaagtgtaccagtcaaacaggaggaagaagatgatgatcctgccacgagaaga aagaagaaaaaaatgactatccaggtgagggcagaaataagttacaaagagagagaagaagaagaaacaatggaggaagt agtggataaaaaagaagaaaaagaagctgaaccagaggagcagattcagttcaaaaccaaaatggggaggaatatctacc ggactctgttcaagcagaaacagccggagaggaacgagctgttcttacctagacgtatggcgtatgtagtagacatcgag gatgaatttgccgacagtgatgttcccacaacaacaattcggagcaaggctgattgtccgacactcgaggctaatgccac tctgacaaccaatgatattgtcatcaacaaactgacacagatcttatcctacctcagacagggaaggcgagaaaacaaaa aactcaaaaagaaagaaaaaggtaaaataaaagaggaggataaggccagagagaagcttccaggagctgatatggatcga gcttatgtcatcacccttcgtccggcgtccgtccgtccgtccgtctgtccgtccgtaaacaattcttgtgctcgcaactc ctctgaaactataagagatagaaatgaaactctttttgcattacacttgtatatacacagacctggctga |
|
Protein
| Protein ID | pfu_aug2.0_68.1_26778.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_68.1_26778.t1 MPERETEVFSNPLPPTDFNINDEDDEGHALTNEDFRKMLMTPRVTSSSTASAVAPKAVAKVPKSVPVKQEEEDDDPATRR KKKKMTIQVRAEISYKEREEEETMEEVVDKKEEKEAEPEEQIQFKTKMGRNIYRTLFKQKQPERNELFLPRRMAYVVDIE DEFADSDVPTTTIRSKADCPTLEANATLTTNDIVINKLTQILSYLRQGRRENKKLKKKEKGKIKEEDKAREKLPGADMDI YTDLADYNPYSKSSKDKKEKKDRDRGDDHRDRGRDRDRGDRDRERDYR |
|
| Protein ID | pfu_aug2.0_68.1_26778.t2 |
| Definition | - |
>pfu_aug2.0_68.1_26778.t2 MPERETEVFSNPLPPTDFNINDEDDEGHALTNEDFRKMLMTPRVTSSSTASAVAPKAVAKVPKSVPVKQEEEDDDPATRR KKKKMTIQVRAEISYKEREEEETMEEVVDKKEEKEAEPEEQIQFKTKMGRNIYRTLFKQKQPERNELFLPRRMAYVVDIE DEFADSDVPTTTIRSKADCPTLEANATLTTNDIVINKLTQILSYLRQGRRENKKLKKKEKGKIKEEDKAREKLPGADMDR AYVITLRPASVRPSVCPSVNNSCARNSSETIRDRNETLFALHLYIHRPG |
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