Gene
| Gene Model ID | pfu_aug2.0_68.1_26779 |
|---|---|
| Locus | scaffold68.1 : 190250 ... 214763 : + |
| To GenomeBrowser | scaffold68.1:190250..214763 |
| Genes list of scaffold | scaffold68.1 |
| Synonym | pfu_aug1.0_9453.1_09955 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_68.1_26779.t1 | 10 | 1 | Reo_sigmaC | 121 | 217 | 6.3e-12 | 45.3 | 0.00014 | 0.24 | 10.5 |
| pfu_aug2.0_68.1_26779.t1 | 10 | 2 | Reo_sigmaC | 293 | 382 | 6.3e-12 | 45.3 | 0.057 | 94.0 | 2.0 |
| pfu_aug2.0_68.1_26779.t1 | 10 | 3 | Reo_sigmaC | 388 | 466 | 6.3e-12 | 45.3 | 0.0014 | 2.2 | 7.3 |
| pfu_aug2.0_68.1_26779.t1 | 10 | 4 | Reo_sigmaC | 480 | 546 | 6.3e-12 | 45.3 | 0.001 | 1.7 | 7.7 |
| pfu_aug2.0_68.1_26779.t1 | 10 | 5 | Reo_sigmaC | 563 | 706 | 6.3e-12 | 45.3 | 0.00023 | 0.39 | 9.8 |
| pfu_aug2.0_68.1_26779.t1 | 10 | 6 | Reo_sigmaC | 702 | 794 | 6.3e-12 | 45.3 | 0.00057 | 0.93 | 8.6 |
| pfu_aug2.0_68.1_26779.t1 | 10 | 7 | Reo_sigmaC | 855 | 996 | 6.3e-12 | 45.3 | 1.1e-07 | 0.00018 | 20.7 |
| pfu_aug2.0_68.1_26779.t1 | 10 | 8 | Reo_sigmaC | 1084 | 1145 | 6.3e-12 | 45.3 | 0.043 | 71.0 | 2.4 |
| pfu_aug2.0_68.1_26779.t1 | 10 | 9 | Reo_sigmaC | 1091 | 1176 | 6.3e-12 | 45.3 | 0.0074 | 12.0 | 4.9 |
| pfu_aug2.0_68.1_26779.t1 | 10 | 10 | Reo_sigmaC | 1165 | 1263 | 6.3e-12 | 45.3 | 0.00017 | 0.29 | 10.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_68.1_26779.t1 | gi|556980449|ref|XP_005996912.1| | PREDICTED: hyaluronan mediated motility receptor [Latimeria chalumnae] | 1.0e-36 |
| pfu_aug2.0_68.1_26779.t1 | gi|698448787|ref|XP_009818467.1| | PREDICTED: hyaluronan mediated motility receptor, partial [Gavia stellata] | 1.0e-36 |
| pfu_aug2.0_68.1_26779.t1 | gi|694852671|ref|XP_009467713.1| | PREDICTED: hyaluronan mediated motility receptor [Nipponia nippon] | 6.0e-36 |
| pfu_aug2.0_68.1_26779.t1 | gi|695140153|ref|XP_009512525.1| | PREDICTED: hyaluronan mediated motility receptor, partial [Phalacrocorax carbo] | 1.0e-35 |
| pfu_aug2.0_68.1_26779.t1 | gi|723138815|ref|XP_010286217.1| | PREDICTED: hyaluronan mediated motility receptor [Phaethon lepturus] | 3.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_68.1_26779.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_68.1_26779.t1 atgtcttttgcaaaagcaagcatcaagcgatttaatgaagataaggggtgtgccccaccagtaggagcctacaacccaaa ggagggagaaaagaaaggagccattgtgattgaaaagacagaaaggttcaaaaatcaaaaagatgcaactcctggggttg gagcatttgatataagtaggagcacaccatcaaaaacaccaaaaccaaatgagtctgtgtgcagtcaaccatcaaatatg tcatttgccaagccaaagttaaagccaatgtcaaatccagctgacgtggcaaaaatcaaagaacttgagaaagagataaa gaagctattactagagagaactgatcaagggaagcagatctctcagaaagaagatgatattgtgaagcttgaaggacgtt tacacacagcacaaactgacaaaagttccctgatcgctaaagtggcttccctagaaaaggaacagaaagagatcaagaaa agtaatgagcatctgaaaaacaaggtttcgaccatggaaaatgcaggaaaacgccatgaaggaattcaaacagagttgtc tgccttgaaacatcagcttgaccttaaggacaaagagattgctcatctgaaggaagagttggaatctgctaaagctgccc acatgtctgactataccgtctttgagaaaatcataactacactggaagagaagatgtctgacttagacataaatagtcat gagaactgtcctaagtgtgatgaggataaagaaaacatgcaaccagaagacaatccagaccataacgagaaggccgtaga aggagtaagaaaaaacagtattaaagaagacaagtgtaaaagaaaaattgagaaactgcaaaagagattttcggaggtca ttggaggatacagtgccaagatgatggacttctctcacaaatatcatgaggctgtcgtcaggggagatgaccttcaacag atcattacacagaaagaaaaatgtcttcaggatctcagggatacactgacaatggaaaaacagcttttccatgacagaat gaaagatctaggaatagagagcttggaggatatggagcaaatagggtatctaaagggcaatgtgtcaagtgtagtagaga atatcaagattaaggatcagagaatatttgaggccaatgcagaaatagcagccttacgagaaaaactcgacaatctggat gaggagaaaaatgttttgaatggaaacatccaatctctgacagaaaaattccacaatatagagctagcacttgatgagga agaaacaaagagtaaacaaagcttggagaaattagatgcccagttacgtgtgacacgagacaacctacttgacctgcaga ctgaacatgatgtcctgcagtgtaaaaacaaggagcttattagatgtcttaacaaagaaaagggggagagagaaacacta gcatatcagctgtcagaccaggaggttagctctggtgatatgttaacactggtacagaccaaggaggaattaatcacaga cctagagatacaactagaggccaacagggtggaaatgaaacatgtcaaggaaacaatggaagaacagtgtgaaaaaattc aacatcttcaaaatcaagtgacagaactggaacgttccctgaaggaaaaagaagacctctgtatgagcactgaaagccag aatcaacagaaagatatggagatgagtaacatacagagtgaattatccactgtacaggcagagagggaagatctgaaaaa tgtcgtgaaggaatacgaggagaaactggaagtttacagagagaggataggaaaatatgagacagaaataaccgctttgg aactgaagctagaagacatggagagtgactactttgagacagccaaagagaacggtaatttactggaggaagctaataag aaagtggatcagctgacagaacttaaatcagaactacttaaacaaatcaatgatctgtcatccgagaaaagtcagttggt gcaggaatactcagacttagaaaaacaacttgagacccataagaaggaaatgacagagtgtgagcagagtttacagaatg ctaacttaaagctcatggaagaggtacaggatgtgaagagcaaaaaggaggaattagaggaaagagttatagcacttgac aatggcaggcaagaaatggaggtcactgtgaaggcaaaagaagtaacgatcaggggtctgcagaatgaactagaggctga aacacagagtaaagcagctttaacaagtagtcatgagaaacttaagtcacgagaaaaagaaatgtcttcagttatctgtg acaaggagaaagctattgaaagtttcaaaaaggaaataggacagttgatgaaggaaatagactatttatctgaagtgaga gagcaggatcaaattgagacaaaagataagttggaattgtatgaaaaaaggatcagtcagttaggggaagaaaaaatgaa actggaaaatgaaattaaatttgttgatagtgagaagaaagctttggagtctgaagtatttattctgaagtctgagattg aatctttgaaggaagagcttgagaaagagcgggagactgtctcgggcgagattcacaactttacagagagaatagcggag tataaggcagaacagtacatatcagaacagacaatacaggacttggactctaaggtagagagtctacaagtggaaaatga ggagctgtcaagtcagtgtgatcatctacaggacaaagtgacggaactcaaacaagagagtgagaaagttgtaggtttac agattcagctgaataatttatcagaggaaaattcctgtttgacagaccaagtaggcaaatctgaggaaacaaagtgtgcc atgagaaaggaaatagagaagttggagagtgagttatcagtcatgggagaaaaattgaagaaagagtccgagaatctgca ggataatgaaaaacgattccaagcattgttacaggaggaagtacataaacgctgtgtgaaggagcaggagtcggagaaat tacagaaacaatggacagaggatcaacagaaatggcagctagaaatcaaatctggcatagaattgttggagaaagcacaa agagaggttgataatgagaagcagttgagaaaaacattgatagaggataacagaaaactagagcagaacttcagccgtct ggaatccgactcacatgagtataaaaaacaatttcacaggttgcaagatgagtacaagacatcaatagagcatatcaagg ttctgacagccgagctgaacggagctcatagcgagaataccaagctcacagagagagttaaccaagtagaaaactttctg gaggagcaaacaagggagatagaggatatcagaatgaagcatgaagaggagctaactcagatacaaaacaacacaaaaag ctcctctgatccagaggagttagacagacttactgctgaatgtgaaaaatggcaaaaactttatgaggacctgtccacaa aagtagaacccttcatggagcagctagatgcctttgaactagaaaagcaagcattacttggtaggagtaaccacgctcaa gcggagatagacaaactcagtacacagtatgccaaacttctcggccatcagaaccagaaacaaaaaatacatcatatcat caaaatgaaggaggaaaacaacagtctacgaaaggaggtcacctccctgaaggaacagtgctctaaacagaagagaacaa taaccaaactagaggagaagcttgacaccaaagatggtaagaagagatttgatccctctaaggcattctccttcttcaag ggcaaggagaatgatggagctacaccatctgccacacccctcaaagaaggtaacagaaaatga |
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Protein
| Protein ID | pfu_aug2.0_68.1_26779.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_68.1_26779.t1 MSFAKASIKRFNEDKGCAPPVGAYNPKEGEKKGAIVIEKTERFKNQKDATPGVGAFDISRSTPSKTPKPNESVCSQPSNM SFAKPKLKPMSNPADVAKIKELEKEIKKLLLERTDQGKQISQKEDDIVKLEGRLHTAQTDKSSLIAKVASLEKEQKEIKK SNEHLKNKVSTMENAGKRHEGIQTELSALKHQLDLKDKEIAHLKEELESAKAAHMSDYTVFEKIITTLEEKMSDLDINSH ENCPKCDEDKENMQPEDNPDHNEKAVEGVRKNSIKEDKCKRKIEKLQKRFSEVIGGYSAKMMDFSHKYHEAVVRGDDLQQ IITQKEKCLQDLRDTLTMEKQLFHDRMKDLGIESLEDMEQIGYLKGNVSSVVENIKIKDQRIFEANAEIAALREKLDNLD EEKNVLNGNIQSLTEKFHNIELALDEEETKSKQSLEKLDAQLRVTRDNLLDLQTEHDVLQCKNKELIRCLNKEKGERETL AYQLSDQEVSSGDMLTLVQTKEELITDLEIQLEANRVEMKHVKETMEEQCEKIQHLQNQVTELERSLKEKEDLCMSTESQ NQQKDMEMSNIQSELSTVQAEREDLKNVVKEYEEKLEVYRERIGKYETEITALELKLEDMESDYFETAKENGNLLEEANK KVDQLTELKSELLKQINDLSSEKSQLVQEYSDLEKQLETHKKEMTECEQSLQNANLKLMEEVQDVKSKKEELEERVIALD NGRQEMEVTVKAKEVTIRGLQNELEAETQSKAALTSSHEKLKSREKEMSSVICDKEKAIESFKKEIGQLMKEIDYLSEVR EQDQIETKDKLELYEKRISQLGEEKMKLENEIKFVDSEKKALESEVFILKSEIESLKEELEKERETVSGEIHNFTERIAE YKAEQYISEQTIQDLDSKVESLQVENEELSSQCDHLQDKVTELKQESEKVVGLQIQLNNLSEENSCLTDQVGKSEETKCA MRKEIEKLESELSVMGEKLKKESENLQDNEKRFQALLQEEVHKRCVKEQESEKLQKQWTEDQQKWQLEIKSGIELLEKAQ REVDNEKQLRKTLIEDNRKLEQNFSRLESDSHEYKKQFHRLQDEYKTSIEHIKVLTAELNGAHSENTKLTERVNQVENFL EEQTREIEDIRMKHEEELTQIQNNTKSSSDPEELDRLTAECEKWQKLYEDLSTKVEPFMEQLDAFELEKQALLGRSNHAQ AEIDKLSTQYAKLLGHQNQKQKIHHIIKMKEENNSLRKEVTSLKEQCSKQKRTITKLEEKLDTKDGKKRFDPSKAFSFFK GKENDGATPSATPLKEGNRK |
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