Gene
| Gene Model ID | pfu_aug2.0_68.1_26795 |
|---|---|
| Locus | scaffold68.1 : 466780 ... 472988 : + |
| To GenomeBrowser | scaffold68.1:466780..472988 |
| Genes list of scaffold | scaffold68.1 |
| Synonym | pfu_aug1.0_1548.1_66022 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_68.1_26795.t1 | 6 | 1 | Cadherin | 21 | 100 | 0.0 | 297.2 | 1.3e-14 | 9.8e-11 | 41.7 |
| pfu_aug2.0_68.1_26795.t1 | 6 | 2 | Cadherin | 114 | 208 | 0.0 | 297.2 | 5.9e-21 | 4.3e-17 | 62.1 |
| pfu_aug2.0_68.1_26795.t1 | 6 | 3 | Cadherin | 225 | 313 | 0.0 | 297.2 | 1.1e-12 | 7.9e-09 | 35.6 |
| pfu_aug2.0_68.1_26795.t1 | 6 | 4 | Cadherin | 327 | 413 | 0.0 | 297.2 | 3.7e-19 | 2.7e-15 | 56.3 |
| pfu_aug2.0_68.1_26795.t1 | 6 | 5 | Cadherin | 433 | 523 | 0.0 | 297.2 | 5.4e-20 | 4.0e-16 | 59.0 |
| pfu_aug2.0_68.1_26795.t1 | 6 | 6 | Cadherin | 549 | 631 | 0.0 | 297.2 | 1.4e-17 | 1.0e-13 | 51.3 |
Transcript
| Transcript ID | pfu_aug2.0_68.1_26795.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_68.1_26795.t1 atgcgtgccatcttgccgttagtcatcgtcatcgtcntaaattcaacctatccgataccgagtgcagtcgaccgcgatgt taatccgaatttcgtgattcaatcgtaccagcttcaacccgataccagtccgttctctcttgtcatcgataattctagcg gcggaagtcgagatttgaagctggtgttgcgccagaaacttgatcgtgagaaaacggaccgatatgaactccatgtcgtt gcgcaggatggcgggagtccgaaaagatcaggagttcttgttgtcaatgttaccgtagaggatgtgaacgataacaaacc catattcagctatccgcaatataacattactgtgctagaaaacgtcagcgtcggaaacgtccttattcaggtgtctgcac gcgatgatgacgaaggactgaacggggccgtcttttacgagttctctcctctttttactggagagagtaggaactttttc tctataaatggttcatcaggggaaataaccttacaaaaacaactgacatttacttccggtcagcctcaccgcctcgttgt caaagcctccgatagagggagccctcctcaaagtagccaagcttacgttaacattcacgtgacggataccaacaatcact caccggaaattaaaataaacctcatttctgatggaaaggtaaaggaaaactcaaataatggcactgttattgcttatgta gccgtaatcgacagggatacgggcagaaatgcgctagttgtatgccagattagaaactccaaattccaactgcacacact tgccgataatgaatacaaagttgtggtttacgctaaactagatagagaatctgagatcgaacacgtggtaacgatagtct gtgaggacgacggaacaccaaagaggaacagttcagaaagcttcattgtccaggtgctcgatgtaaatgaccattctcct acatttgagaaagacatgtacacagtgtccgtatctgaaaacaaaagtccgggagagatgatcaccaaagttagcgcgtc cgacaaagaccaggatcaaaacgctaagctgatatactctgttcaagaagacttcaaggacaagttcagagtggacggtg agtcgggtataataaccactcgagtggaatttgatcgtgaagttctagatcatatggagttcaaagtatacgccgccgac caaggctcaccaatcgcttacacggcctccactatgatcaacctaactatcgaagacgaaaatgacaacatgcctacttt cgattcgcagaccttgaacttttccgtttcggaaaatcatgctgatattgccgtcggaactgtcgtagcaacggataaag attctggtgctaacggagatataatttacaattttccgctgccgtttcagaattctattccgttcacgatacatccggtt tccggtgaaattagaacgaacaggaagttgaatagggaggataagtctaaatatagctttgttgtgatggcaaccgacaa aggcgtctctccgcgaaattcttcagttttagttaatgtagacgttctggatgaaaacgacgagtatccgcaaatagtgt atccccttcaaagcaatggatctataaaagtagggcatgatacatatccaaactccgtagtgaccaaggtcgaggccttt gaccttgacgatggcgaaaacggtacactgaagtatagcattcgccaaagaaacgacgacaatctattctacatagacgg aaaaacgggaactatttatttggcacgaaaaatagaaaactacgatatcaaagattacagcattacgattgaagtttccg ataggggaacggaccccaaatctgtgacagtagaggtcaagttgaccataacctacaccccgaccccagcggcccaggag caggccataggtcagaacgttctgatagccattactatagcttgtgtgactattgtgctatccttagctattatagtaac tattttcctcatcagacgtgttgactataacaaaaaaggccaacctttacctcctaattcggactatcaaatagccgaat ctatgcaatatagtgccaaaaaatcttgtcttacaaaatctgatccccagaggacttacttatgtgaaaataacaatttt tcatcaaatgacaatagaaaggaagttagtttttcattagatgacggacagagggactcgggagtgtttatgattggaca cgagcaccctagtcctcttactgtgtcaaccaatcaaaatccagtgggnaactattttcctcatcagacaaaggaagtta gtttttcattagatgacggacagagggactcgggagtgtttatgattggacacgagcaccctagtcctcttactgtgtca accaatcaaaatccagtgggccatcatcacgttggaccatttcatagtccgcccaacagtcattcttcgccagttaccgg caggcggagtcacagtcctttatcagatgggttgcatgaagaactacacagaatggcgtcgataagactccatgagaaat atcttcattccttcaacaaaccattggtttatcatccagaagaaaataagcacttcctatcactgaagcgtcatggtgat gataaccatagtaacgggtcagatgacctgacagtgtcagacagtgggcgtggcggaagcatggaggacgtacataaaag cagcataatgatatag |
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Protein
| Protein ID | pfu_aug2.0_68.1_26795.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_68.1_26795.t1 MRAILPLVIVIVXNSTYPIPSAVDRDVNPNFVIQSYQLQPDTSPFSLVIDNSSGGSRDLKLVLRQKLDREKTDRYELHVV AQDGGSPKRSGVLVVNVTVEDVNDNKPIFSYPQYNITVLENVSVGNVLIQVSARDDDEGLNGAVFYEFSPLFTGESRNFF SINGSSGEITLQKQLTFTSGQPHRLVVKASDRGSPPQSSQAYVNIHVTDTNNHSPEIKINLISDGKVKENSNNGTVIAYV AVIDRDTGRNALVVCQIRNSKFQLHTLADNEYKVVVYAKLDRESEIEHVVTIVCEDDGTPKRNSSESFIVQVLDVNDHSP TFEKDMYTVSVSENKSPGEMITKVSASDKDQDQNAKLIYSVQEDFKDKFRVDGESGIITTRVEFDREVLDHMEFKVYAAD QGSPIAYTASTMINLTIEDENDNMPTFDSQTLNFSVSENHADIAVGTVVATDKDSGANGDIIYNFPLPFQNSIPFTIHPV SGEIRTNRKLNREDKSKYSFVVMATDKGVSPRNSSVLVNVDVLDENDEYPQIVYPLQSNGSIKVGHDTYPNSVVTKVEAF DLDDGENGTLKYSIRQRNDDNLFYIDGKTGTIYLARKIENYDIKDYSITIEVSDRGTDPKSVTVEVKLTITYTPTPAAQE QAIGQNVLIAITIACVTIVLSLAIIVTIFLIRRVDYNKKGQPLPPNSDYQIAESMQYSAKKSCLTKSDPQRTYLCENNNF SSNDNRKEVSFSLDDGQRDSGVFMIGHEHPSPLTVSTNQNPVXNYFPHQTKEVSFSLDDGQRDSGVFMIGHEHPSPLTVS TNQNPVGHHHVGPFHSPPNSHSSPVTGRRSHSPLSDGLHEELHRMASIRLHEKYLHSFNKPLVYHPEENKHFLSLKRHGD DNHSNGSDDLTVSDSGRGGSMEDVHKSSIMI |
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