Gene
| Gene Model ID | pfu_aug2.0_680.1_01039 |
|---|---|
| Locus | scaffold680.1 : 104889 ... 117703 : - |
| To GenomeBrowser | scaffold680.1:104889..117703 |
| Genes list of scaffold | scaffold680.1 |
| Synonym | pfu_aug1.0_18482.1_47219 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_680.1_01039.t1 | 12 | 1 | WD40 | 29 | 66 | 3.9e-10 | 39.2 | 4.3e-05 | 0.32 | 10.9 |
| pfu_aug2.0_680.1_01039.t1 | 12 | 2 | WD40 | 96 | 126 | 3.9e-10 | 39.2 | 0.0035 | 26.0 | 4.9 |
| pfu_aug2.0_680.1_01039.t1 | 12 | 3 | WD40 | 186 | 199 | 3.9e-10 | 39.2 | 0.67 | 5000.0 | -2.4 |
| pfu_aug2.0_680.1_01039.t1 | 12 | 4 | WD40 | 206 | 225 | 3.9e-10 | 39.2 | 0.32 | 2400.0 | -1.4 |
| pfu_aug2.0_680.1_01039.t1 | 12 | 5 | WD40 | 260 | 287 | 3.9e-10 | 39.2 | 0.025 | 180.0 | 2.2 |
| pfu_aug2.0_680.1_01039.t1 | 12 | 6 | WD40 | 314 | 335 | 3.9e-10 | 39.2 | 0.045 | 340.0 | 1.3 |
| pfu_aug2.0_680.1_01039.t1 | 12 | 7 | WD40 | 456 | 474 | 3.9e-10 | 39.2 | 8.8e-05 | 0.65 | 9.9 |
| pfu_aug2.0_680.1_01039.t1 | 12 | 8 | WD40 | 493 | 532 | 3.9e-10 | 39.2 | 0.0052 | 38.0 | 4.3 |
| pfu_aug2.0_680.1_01039.t1 | 12 | 9 | WD40 | 604 | 617 | 3.9e-10 | 39.2 | 0.14 | 1000.0 | -0.2 |
| pfu_aug2.0_680.1_01039.t1 | 12 | 10 | WD40 | 651 | 667 | 3.9e-10 | 39.2 | 0.0044 | 32.0 | 4.5 |
| pfu_aug2.0_680.1_01039.t1 | 12 | 11 | WD40 | 743 | 781 | 3.9e-10 | 39.2 | 1.8e-06 | 0.014 | 15.3 |
| pfu_aug2.0_680.1_01039.t1 | 12 | 12 | WD40 | 803 | 835 | 3.9e-10 | 39.2 | 0.0078 | 58.0 | 3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_680.1_01039.t1 | gi|676496968|ref|XP_009067388.1| | hypothetical protein LOTGIDRAFT_170485 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_680.1_01039.t1 | gi|632946816|ref|XP_007888745.1| | PREDICTED: WD repeat-containing protein 6 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_680.1_01039.t1 | gi|301607013|ref|XP_002933122.1| | PREDICTED: WD repeat-containing protein 6 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_680.1_01039.t1 | gi|527262565|ref|XP_005149518.1| | PREDICTED: WD repeat-containing protein 6 [Melopsittacus undulatus] | 0.0 |
| pfu_aug2.0_680.1_01039.t1 | gi|557021250|ref|XP_006010924.1| | PREDICTED: WD repeat-containing protein 6 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_680.1_01039.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_680.1_01039.t1 atgttgtttcttacggtcacacattcaaagaaagacaactctcacagtcttgttacctcattaactgatataatggaggt agaggattgggtatgggatgcttgcttccttaaggagggtgtcattttctctgtaaactacaacaacgccagaaaacaga tatgctcggtatctgatgacaggagtatacgattatatcagctaacatttactgaacaaacaacatgcagttactcaggc aatggtgaagctccttccatctctagttggcagagtgctaaatgtgagctcctcctatcactgtttggtcactcagctag agtgtgggacgtcaaacttctgtctaatagaattgtcagtgttggagagggtaaaagtgtatggagtctagcggtagata atcaagaaaaatttgtggttctgtcgtacagtacatcaactggtgactggaatttactgatggatgacactgagtacaaa tcgtatgtaactctggcagtgtccccatacagccgtagtgaaatactattagggaatatatcaggccatatcaaactgct tgtatccagtaatgacaagaaggatttcatctgggaacagtttgattggtgtatacactcaggaaaaatatttagcctcc attggttattacatgacactttccttacaactggaccagaaggcgaaataaccatgtggaaactcatacacaaagagagg gcagaggaaaggattgaacttgacaaacttaacacatacaatctacctacatgtaaacacagatgggtatcgggtgccgc tattgtgacgtcacatgatctgttagtgtgcggagacagagggggtacagtacacgtatatccacggatgccaacagaaa accaggtagataaaaagcagtcccagaatcctgttcagagttttgttcaaattcatggcaaagccggagtgacagacgtg cgttgctatggagatgaggtctacacggctgggagggacggacattacagaaaatacagcgtagataatggagctctggt gttactaacaagctgtagggtatataaagggttggaatggattggcaggctggaactctctgatcataatgatgtactta tctatggatttcactcgagtgattttgtgttatggagcactgtaaacaatcagaagctgatccaggttgagtgtggaggg gggcacaggacctgggactgttgtatccagggtaatgtcttcaacatggttcatcttaaagcaagggatatagtattatc acaggcagacttatggaaaaatcaagtacttcttaaggagagcttacatgggagagagcttacaagtgtgagatatgtat gccctttttctgatgatggttgtgtcatagtaacagcaagtgaagatacaagtatacaagtctccattttatcctataat gaccatcatgtgatgtgcctcagtacgctgcttcccttacaaggtcatatatccaatgtcagaactctgtctgtctgtac gtctggattcctacaatgcaacaggaacagaaagttgattttttccggaggaggaagagctcaagtgattgtttggagat taacatttcccgacaaattttgttcaatggagcaaaaaaagttgtgctactctgaaaacttgtgtaattttatattgggt caaaatgtgaaacatttcaaaattaggtcatggaaactccagcagagaaaaccaaatccagagacgaggttcatggattt aaaggcggtacaattatctgatgtttttaaccatgtgccttctcaccttcatgtactttgtgctgcatgctcagacggat ttgtaagatttttcctatttgatgagaatctacgacagctttatctaatcacagagaatgaattccataatcattgtgtc ctcaaagtcattgacctcacatacaaacacagacttatgttcttgtctgctgctactgatgggaggatagcactgtggga tatcacctccatattacttacatacttaacggaaaattgcagtcatctgaatcaaaatgcagactcagtaatagatagtg ctagtcatgatcaaaatttgccagaagacttgagagatgatgatgaaaatgatagtgcaccagcctttgatcagaaagat tccaaaattgtttctagtcataaacttaaaaataaagaagtggacttaaaggattctgctattatagagcctgtgtatgt agagacatgtcatcagtcaggaattaatgcattgcatgttcataataatacagattcagaatattttatagcaagtggag gggacgataatgctttatgtgtgatacacataaaggttaccatggaaatgaatgccttgaaaatacagaaactgaattct ggctgtaaactagatgcccattctactcaagtaacaggtgttcatattttatcacccactaagatcctgtctgtatccat tgaccaaagactatgtacatggagccttcactttacaccatcagagattgagtttgaaaactccagtacaaagtgtatca atgtatcagatgttcagtgcatggatgtgaaggagtgtagtcaacaaacaaggactagcggtgaccaggaaaggggcaca gaggtactcataggagggcagggactgtcttactacaatgtcacatga |
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Protein
| Protein ID | pfu_aug2.0_680.1_01039.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_680.1_01039.t1 MLFLTVTHSKKDNSHSLVTSLTDIMEVEDWVWDACFLKEGVIFSVNYNNARKQICSVSDDRSIRLYQLTFTEQTTCSYSG NGEAPSISSWQSAKCELLLSLFGHSARVWDVKLLSNRIVSVGEGKSVWSLAVDNQEKFVVLSYSTSTGDWNLLMDDTEYK SYVTLAVSPYSRSEILLGNISGHIKLLVSSNDKKDFIWEQFDWCIHSGKIFSLHWLLHDTFLTTGPEGEITMWKLIHKER AEERIELDKLNTYNLPTCKHRWVSGAAIVTSHDLLVCGDRGGTVHVYPRMPTENQVDKKQSQNPVQSFVQIHGKAGVTDV RCYGDEVYTAGRDGHYRKYSVDNGALVLLTSCRVYKGLEWIGRLELSDHNDVLIYGFHSSDFVLWSTVNNQKLIQVECGG GHRTWDCCIQGNVFNMVHLKARDIVLSQADLWKNQVLLKESLHGRELTSVRYVCPFSDDGCVIVTASEDTSIQVSILSYN DHHVMCLSTLLPLQGHISNVRTLSVCTSGFLQCNRNRKLIFSGGGRAQVIVWRLTFPDKFCSMEQKKLCYSENLCNFILG QNVKHFKIRSWKLQQRKPNPETRFMDLKAVQLSDVFNHVPSHLHVLCAACSDGFVRFFLFDENLRQLYLITENEFHNHCV LKVIDLTYKHRLMFLSAATDGRIALWDITSILLTYLTENCSHLNQNADSVIDSASHDQNLPEDLRDDDENDSAPAFDQKD SKIVSSHKLKNKEVDLKDSAIIEPVYVETCHQSGINALHVHNNTDSEYFIASGGDDNALCVIHIKVTMEMNALKIQKLNS GCKLDAHSTQVTGVHILSPTKILSVSIDQRLCTWSLHFTPSEIEFENSSTKCINVSDVQCMDVKECSQQTRTSGDQERGT EVLIGGQGLSYYNVT |
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