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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_680.1_01045
Locus scaffold680.1 : 213259 ... 233013 : -
To GenomeBrowser scaffold680.1:213259..233013
Genes list of scaffold scaffold680.1
Synonym pfu_aug1.0_9325.1_02743

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_680.1_01045.t1 3 1 Herpes_UL45 6 157 9.3e-07 28.4 4.2e-07 0.0031 16.9
pfu_aug2.0_680.1_01045.t1 5 1 Lectin_C 45 155 9.0e-30 103.4 3.1e-15 2.3e-11 44.2
pfu_aug2.0_680.1_01045.t1 3 2 Herpes_UL45 159 211 9.3e-07 28.4 0.00038 2.8 7.3
pfu_aug2.0_680.1_01045.t1 5 2 Lectin_C 186 250 9.0e-30 103.4 2.8e-09 2.1e-05 25.0
pfu_aug2.0_680.1_01045.t1 5 3 Lectin_C 261 326 9.0e-30 103.4 6.4e-07 0.0047 17.5
pfu_aug2.0_680.1_01045.t1 3 3 Herpes_UL45 331 375 9.3e-07 28.4 0.0063 47.0 3.3
pfu_aug2.0_680.1_01045.t1 5 4 Lectin_C 338 355 9.0e-30 103.4 0.7 5200.0 -1.9
pfu_aug2.0_680.1_01045.t1 5 5 Lectin_C 362 424 9.0e-30 103.4 5.3e-09 3.9e-05 24.2

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_680.1_01045.t1 gi|676450733|ref|XP_009052475.1| hypothetical protein LOTGIDRAFT_231745 [Lottia gigantea] 3.0e-38
pfu_aug2.0_680.1_01045.t1 gi|676487349|ref|XP_009064264.1| hypothetical protein LOTGIDRAFT_131080, partial [Lottia gigantea] 2.0e-27
pfu_aug2.0_680.1_01045.t1 gi|524889813|ref|XP_005101458.1| PREDICTED: macrophage mannose receptor 1-like [Aplysia californica] 2.0e-16

Transcript
Transcript IDpfu_aug2.0_680.1_01045.t1
Definition-
>pfu_aug2.0_680.1_01045.t1
atgaaaaagtttgtttcaaccctcgttactgttctcctctttcatgtgcaaatagattacagctggtctgatcattgtcc
aaatggaccatgggtcaatgtccagggaacttgttattacttcagcacacaaccactgacctataaggaatcattccaac
aatgccaaaacctacagtcagatctgcttatattcttcggcgagcaagataggttggcctttgtgaataagactaaatca
atgggtattacaacagaaagatggtggacctcgctgagcgacctgaatcatccggggacttggacatggggacagtcacc
ggcagctgttaccgccttaggaaactctgtagtctggaatgtagaaccggatgattcggcacacattgagaattgtggag
caatgaacattcaggggacgattagcgacgaaaaatgtggtgaaaaacatggatttatatgtgaacttcctacgtctgga
ggctgtcccgatggctggatgagcaccgatacagcatgctacctgttcagtgacttctcagatccttatagctttaagac
gtggaacaatgctaaagtttactgcagtaatgttattcagcaagcgggacctacagctcaccttatatacctggagacag
ccaatgaactggcttacatacgaagacagctaccgggagttaatatgacgtcacaaatatggtggataggcatgaacgac
aaacttcacgagaatgcatggcattggttggagtttgaatccagacgatggttaggtgtaccattttggagtggtctgaa
tttcaaacaagatcaaaatttgtggtattggtcgacaggcctgtcagctaaccgcactttgattcattgggattctgaac
caaatgattttgcggggagagaggattgtgcatttatcttccaggacggcacatttaatgactttccatgttttttacct
gctgccgtagcatgtgagcttgattctgaagatgccccatgtccagctggctggacaccgtccttggacgaaggttcctc
cagttgttattacataggtaacacaactcaggcagatatagccacgtggtacgaggcacgtgataaatgtaaagctctta
gcgccccattggatggttatcttctagctgtcaattctgcagacgaaatggcgtatgtttctcagctgatccaacaaaag
acaccaacatctcttggctggtggacaggattgaacgatatgaaaacagaagggcaatgggtctatgatacaccatttaa
taatcctatagtatccaatgtcatgtag

Protein
Protein IDpfu_aug2.0_680.1_01045.t1
Definition-
>pfu_aug2.0_680.1_01045.t1
MKKFVSTLVTVLLFHVQIDYSWSDHCPNGPWVNVQGTCYYFSTQPLTYKESFQQCQNLQSDLLIFFGEQDRLAFVNKTKS
MGITTERWWTSLSDLNHPGTWTWGQSPAAVTALGNSVVWNVEPDDSAHIENCGAMNIQGTISDEKCGEKHGFICELPTSG
GCPDGWMSTDTACYLFSDFSDPYSFKTWNNAKVYCSNVIQQAGPTAHLIYLETANELAYIRRQLPGVNMTSQIWWIGMND
KLHENAWHWLEFESRRWLGVPFWSGLNFKQDQNLWYWSTGLSANRTLIHWDSEPNDFAGREDCAFIFQDGTFNDFPCFLP
AAVACELDSEDAPCPAGWTPSLDEGSSSCYYIGNTTQADIATWYEARDKCKALSAPLDGYLLAVNSADEMAYVSQLIQQK
TPTSLGWWTGLNDMKTEGQWVYDTPFNNPIVSNVM

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