Gene
| Gene Model ID | pfu_aug2.0_684.1_14458 |
|---|---|
| Locus | scaffold684.1 : 120727 ... 139605 : - |
| To GenomeBrowser | scaffold684.1:120727..139605 |
| Genes list of scaffold | scaffold684.1 |
| Synonym | pfu_aug1.0_6975.1_52859 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_684.1_14458.t1 | 1 | 1 | RVT_1 | 104 | 158 | 7.1e-06 | 25.5 | 7.8e-09 | 1.4e-05 | 24.5 |
| pfu_aug2.0_684.1_14458.t1 | 1 | 1 | rve | 413 | 525 | 4.2e-22 | 78.4 | 5.7e-25 | 1.1e-21 | 77.2 |
| pfu_aug2.0_684.1_14458.t1 | 1 | 1 | TatD_DNase | 1210 | 1469 | 1.4e-35 | 122.7 | 1.3e-38 | 2.5e-35 | 121.9 |
Transcript
| Transcript ID | pfu_aug2.0_684.1_14458.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_684.1_14458.t1 atggctctaaagcaattacttatagactattctgatgtgttttcatcacatgaatatgacataggtaactttacagccat tgaacacacaattgacacaggtgattcccctcctatcaagcaacgattaagacgaacacctgtctgttttgctggggagg aggagaaacacttagagaaaatgctcaaggccaatgttattgaaccatctatgtcagaatgggcctcaccaccagtgtta atcagaaagcgtgacggaagtgtacgctgccgagtaatgaatctagtgcttaaaggacttcactggtccgttgtgttggc tttcctagatgatgtattagtgcttggagaaagctttgaaactcacgtaaacaatcttagagacgtatttcagcgtttcc gagactacggcatcaaactcaaagccagaaaatgtgacttattcaaaatggaagtcgagtaccttggcaagactgtggga agagatggtgtgagagtgagtcatcatttcatagaaactatggagaaatggcccactcctacatcaactaaagatgtgga gagattttgtggttttgccaattaccacagaaatttcatcaaagattttgccaaaatatcagcaccattatatgaattga ctggtaagaatccattcatttggaacgaaaggcatcaagtgtccttcgagcaattgaaacaggctcttatcagtgcaccg gttttgacactacctaccaaagaaggaaaattcattttggataccgattcatctgacttcgctattggagctgagctcat tcaaatacaagataacgaagaaagatgtattggttattgcagtttcaatttaactcctgagcagagaagatactgcacta ctagaaaagaactcctagctgttgtgagattcactcgccattttagacactacctgctgggtcgccattttgaagtcaga accgaccacagtagcctacaatggttaatgaatttcaagaacctcaatggccaactagctagatgggttgaggagttaag tcagtattctatgacaatccgtcaccggccaggtcaccaaggctatgataggacccttgctcgtattaaacaacgtttca gttggtatgcgatttcacgggatgttcgacggtttgtcaggtcatgctctgtttgtaaccgaaataagaaggcaaaccgc cgggcaaaagctgaaatgcaacagtttcatgctggagcgcctatggagcgagtacatttagatttcttaggaccattaac acgcactaagaataacaacacttgtattcttatgatggtagaccaattcactaaatgggtcgaatgcataccattgccga accaatcagctgaggcaactgcacaggcagcgttagacgaattctttgcaaggtttggttatccctttcaaattatgact gatcggggaactaattttgaaagtactttgtttagacagctgtgcgagaggcttcagattcataaggcaagaactactgc atttagaccatcatcaaatggtcaagtggaacgttacaatagaaccttgatggacgctgtacgctgttttgttagcaaaa caccgacattatgggatgagtatctacctcaattagcaagtgctctcagatctgctataaataggagcactgggtacact gctaacatgcttatgttagggagagagataaacatgcccatagacttaatgtttcctatgcctaagggaaatgaaaaaga tttagatcagtttgttctggacctgattgaacaaatacattctgttcatgaggttgcaaggacaaatttgaaaacaactc aaaagtatatgaagagagactatgaccttaaaacatttactagagcatacaaagtcggtgatgcagtttatgttcttgac actgcagtagtaaagggtaaatgttcaaaactaagccctacatggaaaggtccagtagtcatggccactggaaaacgaac ttggaaacaagagaggaggagaccagtccataccaactatgtcaatagtgggaaggagcgtcttccatccgagccataca tggagtttcttcataggatgtgtgaggaggagaagctgctgacccccaaaatattagtattggaccttggacttttggac atccctcacagtgaggtatgccgtggtttcgagatacagtatgcagtggctgtgaagaaagcagacaaaaagtggattga cgaagtgaggttggaagcccagtctatctgcacggactcctatattgaccagtctctcccatcgctgaccggtaggaagt tgactaccaaaaagaaagtcaacgtttctatttgggaaccatctacggggatgtgcaaggatgcacgcctacagaaggac ccttccattcctgtaatgagggagaatgctgccgatacagtgagccaactaccaaccaagcttcctacaatccaagagga gccagaggatgagccggaggagggcctggcagggtgttcagttgtttcgactgggcagtctgtcggggctccgtctgcac cattatctgatgagaatgtggacttggaggattcctgtgccatggagacagaagacagtttggctgaggttccagctgtt agccaggcaacacaagccagtgttgtccggttgtctggcgctccagtcagatgtcagaaatctaccaggaatgaagaccg tttggctgaggttccagctgttagccaggcaacacaagccagtgttgtccggttgtctggtgctccagtcagatgtcaga aatctactaggaatgaagaccgtttggctgaggtcccagcagtaagccaggctacacaagccagtgttgtccggttgtct ggtgctccagtcagacgtaagaagataacaccagctattaagacaatgatctttacctcatcggcctttaagaccaggac tagtcagagtgctgacaaaccagcaactgccactaatccagatgacaagcctgtgtcccagccaaagcccgaggtgaaga gaaagcctaataggatggtggaagtcacaggacaacctacctccaaaagaccaaaactgacgatcacaacttccgttcca gaggagatgagcacctgtcctttccccacttgtccctccattgacaagaaagtaaggagacatgtgatgcaacatcattt gccatatacctttggaaagaaagaagagacactagccatttttcaggaacgactggaagcgctgcaaacactcatatggg ccagcgttggaccaaatgccaccatggaggatgccatcaaggttgtaaatgattcacagaccatccccaaggactcctac atcaacccggagcatcaaggtgtattccatgccatgtgccgagccttgaactgggaggagccggaatcattttcaatcaa tccagttgatactccagccgcgctgacccattggagatgcttggttgccttgcttctgaggttaccgtacgagaagcaac gggagtggtgctaagaggagattattgaggaattcatcgtcatggatgaatgcagtgattccagcgatgaaaacggcaat attgatggtgacaccctacaagcctatgacagccatttccaccttgataggacgggccaacacctttgcgggcgcaagga cctgactatggaggagatgctgaaccatgggatggccataaaacctgtattggaggttcagcttgcagggggtgtgattg tccatagcgagccgaagtcgtaccctaagaacttagttttcgggggaaaatggaagctagctttgggcgtacaccccaag catgttgatcagctgaccgcagaccggtacctggagcttcagcaacttgttaaggatccagtagtggctgccataggcga aattggtttggacaggaccgttgaggccaagttctggaggaggcaagatgaaacctttcggagggttctacacctagcga gacccgaccagccagtcatcttgcaccttcgcggaccaaaggaggacaggaacggtgctgatgtccatgccagggcattg cagattatgggcagaatctgtgatgcctcacagaaaattcatattcattgcttcactggagacagtgagatggtccagga gtggagggaacgtttccccaacgcctactttggttttacagccaacgtcaagggatttgccagagaacagatccaggcgc ttcaatccatcccaatggagcggattctcctagagacagattccccctatatgccacctggaggaaaggggatcaacact cccaacttcattggtgatgttgccagtctggtagctgtgaagctggacattcccgtgcccaaattattggctgtgacgcg aaagaatggaaagtgccatcgatgttcacttgggttttacacggcggtagctattagcatggttaggatggttaacagta aatcgttcaatgacaatagcagctcgtgtacggagcctgctgacattcagttaaagtgtccctgtgtgtttgtcatcatc atcatcatcatcatcatcatcatcatcatcatcatcatcatcatatcaccatcatcatcatcaccgtcatcatcatcatc atcatcatcatcatcatcattaccaacncatgaacatgatttggtcttagtatattgtatttttctttga |
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Protein
| Protein ID | pfu_aug2.0_684.1_14458.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_684.1_14458.t1 MALKQLLIDYSDVFSSHEYDIGNFTAIEHTIDTGDSPPIKQRLRRTPVCFAGEEEKHLEKMLKANVIEPSMSEWASPPVL IRKRDGSVRCRVMNLVLKGLHWSVVLAFLDDVLVLGESFETHVNNLRDVFQRFRDYGIKLKARKCDLFKMEVEYLGKTVG RDGVRVSHHFIETMEKWPTPTSTKDVERFCGFANYHRNFIKDFAKISAPLYELTGKNPFIWNERHQVSFEQLKQALISAP VLTLPTKEGKFILDTDSSDFAIGAELIQIQDNEERCIGYCSFNLTPEQRRYCTTRKELLAVVRFTRHFRHYLLGRHFEVR TDHSSLQWLMNFKNLNGQLARWVEELSQYSMTIRHRPGHQGYDRTLARIKQRFSWYAISRDVRRFVRSCSVCNRNKKANR RAKAEMQQFHAGAPMERVHLDFLGPLTRTKNNNTCILMMVDQFTKWVECIPLPNQSAEATAQAALDEFFARFGYPFQIMT DRGTNFESTLFRQLCERLQIHKARTTAFRPSSNGQVERYNRTLMDAVRCFVSKTPTLWDEYLPQLASALRSAINRSTGYT ANMLMLGREINMPIDLMFPMPKGNEKDLDQFVLDLIEQIHSVHEVARTNLKTTQKYMKRDYDLKTFTRAYKVGDAVYVLD TAVVKGKCSKLSPTWKGPVVMATGKRTWKQERRRPVHTNYVNSGKERLPSEPYMEFLHRMCEEEKLLTPKILVLDLGLLD IPHSEVCRGFEIQYAVAVKKADKKWIDEVRLEAQSICTDSYIDQSLPSLTGRKLTTKKKVNVSIWEPSTGMCKDARLQKD PSIPVMRENAADTVSQLPTKLPTIQEEPEDEPEEGLAGCSVVSTGQSVGAPSAPLSDENVDLEDSCAMETEDSLAEVPAV SQATQASVVRLSGAPVRCQKSTRNEDRLAEVPAVSQATQASVVRLSGAPVRCQKSTRNEDRLAEVPAVSQATQASVVRLS GAPVRRKKITPAIKTMIFTSSAFKTRTSQSADKPATATNPDDKPVSQPKPEVKRKPNRMVEVTGQPTSKRPKLTITTSVP EEMSTCPFPTCPSIDKKVRRHVMQHHLPYTFGKKEETLAIFQERLEALQTLIWASVGPNATMEDAIKVVNDSQTIPKDSY INPEHQGVFHAMCRALNWEEPESFSINPVDTPAALTHWRCLVALLLRLPYEKQREWCXEEIIEEFIVMDECSDSSDENGN IDGDTLQAYDSHFHLDRTGQHLCGRKDLTMEEMLNHGMAIKPVLEVQLAGGVIVHSEPKSYPKNLVFGGKWKLALGVHPK HVDQLTADRYLELQQLVKDPVVAAIGEIGLDRTVEAKFWRRQDETFRRVLHLARPDQPVILHLRGPKEDRNGADVHARAL QIMGRICDASQKIHIHCFTGDSEMVQEWRERFPNAYFGFTANVKGFAREQIQALQSIPMERILLETDSPYMPPGGKGINT PNFIGDVASLVAVKLDIPVPKLLAVTRKNGKCHRCSLGFYTAVAISMVRMVNSKSFNDNSSSCTEPADIQLKCPCVFVII IIIIIIIIIIIIIIISPSSSSPSSSSSSSSSSSLPXHEHDLVLVYCIFL |
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