Gene
| Gene Model ID | pfu_aug2.0_6858.1_29544 |
|---|---|
| Locus | scaffold6858.1 : 9033 ... 16759 : - |
| To GenomeBrowser | scaffold6858.1:9033..16759 |
| Genes list of scaffold | scaffold6858.1 |
| Synonym | pfu_aug1.0_1500.1_58541 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_6858.1_29544.t1 | 2 | 1 | Slx4 | 64 | 79 | 1.0e-16 | 60.3 | 0.13 | 1900.0 | -1.4 |
| pfu_aug2.0_6858.1_29544.t1 | 2 | 2 | Slx4 | 152 | 211 | 1.0e-16 | 60.3 | 1.1e-20 | 1.7e-16 | 59.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_6858.1_29544.t1 | gi|662242661|ref|NP_001284564.1| | uncharacterized protein LOC432277 [Xenopus laevis] | 3.0e-29 |
| pfu_aug2.0_6858.1_29544.t1 | gi|674035731|ref|XP_008846037.1| | PREDICTED: structure-specific endonuclease subunit SLX4-like isoform X2 [Nannospalax galili] | 2.0e-28 |
| pfu_aug2.0_6858.1_29544.t1 | gi|26335431|dbj|BAC31416.1| | unnamed protein product [Mus musculus] | 2.0e-25 |
| pfu_aug2.0_6858.1_29544.t1 | gi|26334229|dbj|BAC30832.1| | unnamed protein product [Mus musculus] | 2.0e-25 |
Transcript
| Transcript ID | pfu_aug2.0_6858.1_29544.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_6858.1_29544.t1 aaggatttcaaaactccagtggctataagaggagaaattcgtaaaggacaaaggacacagaaagatcccagtaaagtatg gatgcctccctctccattcacacccatgccagattatgataaaatggctactcccatccttaagagagaagtgcagcgtt atggtgtaaagccaatacccaagaaaaagatgatagtggtactgaaggacatctatcaaaagatgcatgaatatgagacg gatagtgaattggaaatatctaaaggtagtgttgatgatgacgataatgatgttgggaaaatagatgataagcctacagg agacgattctgaagatgaagatataaactgtagtcaggaatcatctaactcttgtactagtgatctgatagaggaaagct ttatgcaaacagaggagactgacttgccagcttcacaacaaccaaaaggagatctgaaagagaaattttcagaatttata gagaaaagaaatgacatatataacaggatacttatgtatgagcctctagagctggattggctgaagaaagaactgaccga tgcaggaataaagacctctatggataaactgatgaattttcttgatgaaaagtgcataacatttactatgaagaacagaa gaaataacagtccaaggaaaagaagaggaagaaaaaagaaggaagaatctacaaataaatga |
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Protein
| Protein ID | pfu_aug2.0_6858.1_29544.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_6858.1_29544.t1 KDFKTPVAIRGEIRKGQRTQKDPSKVWMPPSPFTPMPDYDKMATPILKREVQRYGVKPIPKKKMIVVLKDIYQKMHEYET DSELEISKGSVDDDDNDVGKIDDKPTGDDSEDEDINCSQESSNSCTSDLIEESFMQTEETDLPASQQPKGDLKEKFSEFI EKRNDIYNRILMYEPLELDWLKKELTDAGIKTSMDKLMNFLDEKCITFTMKNRRNNSPRKRRGRKKKEESTNK |
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