Gene
| Gene Model ID | pfu_aug2.0_689.1_31058 |
|---|---|
| Locus | scaffold689.1 : 17200 ... 50995 : - |
| To GenomeBrowser | scaffold689.1:17200..50995 |
| Genes list of scaffold | scaffold689.1 |
| Synonym | pfu_aug1.0_1455.1_37019 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_689.1_31058.t1 | 2 | 1 | PAS | 79 | 141 | 3.0e-16 | 59.2 | 8.8e-16 | 2.2e-12 | 46.7 |
| pfu_aug2.0_689.1_31058.t1 | 3 | 1 | PAS_11 | 89 | 134 | 2.4e-18 | 66.0 | 1.8e-05 | 0.044 | 13.7 |
| pfu_aug2.0_689.1_31058.t1 | 2 | 1 | PAS_3 | 99 | 139 | 2.9e-22 | 78.5 | 1.9e-05 | 0.046 | 13.8 |
| pfu_aug2.0_689.1_31058.t1 | 3 | 2 | PAS_11 | 228 | 334 | 2.4e-18 | 66.0 | 1.7e-16 | 4.2e-13 | 49.2 |
| pfu_aug2.0_689.1_31058.t1 | 2 | 2 | PAS | 235 | 314 | 3.0e-16 | 59.2 | 0.00024 | 0.6 | 9.9 |
| pfu_aug2.0_689.1_31058.t1 | 2 | 2 | PAS_3 | 241 | 327 | 2.9e-22 | 78.5 | 1.3e-20 | 3.2e-17 | 62.4 |
| pfu_aug2.0_689.1_31058.t1 | 3 | 3 | PAS_11 | 412 | 458 | 2.4e-18 | 66.0 | 1.6 | 3800.0 | -2.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_689.1_31058.t1 | gi|512841969|ref|XP_004914602.1| | PREDICTED: single-minded homolog 1 isoform X1 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_689.1_31058.t1 | gi|658911504|ref|XP_008395817.1| | PREDICTED: single-minded homolog 1-like [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_689.1_31058.t1 | gi|548541007|ref|XP_005753118.1| | PREDICTED: single-minded homolog 1-like [Pundamilia nyererei] | 0.0 |
| pfu_aug2.0_689.1_31058.t1 | gi|734622095|ref|XP_010738977.1| | PREDICTED: single-minded homolog 1-like [Larimichthys crocea] | 0.0 |
| pfu_aug2.0_689.1_31058.t1 | gi|327261480|ref|XP_003215558.1| | PREDICTED: single-minded homolog 1 [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_689.1_31058.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_689.1_31058.t1 atgaaggataaatccaagacggcggcccgaacacgaagagaaaaggagaacgccgagttctacgagctggcgaagctact tccgcttccgtccgccataaccagccagttagacaaggcctccattattcgactatgcacaagttacctgaaaatgcgga cagtcttcccagatggtctgggggacgcgtggggacaacgatcaccacacaggaccttactagagaaggagctaggatct catctgttacagacattagatggtttcattttcgtggtcgctccagacggaaagatcatgtacatttcagaaacagcatc tgtccacctgggattgtcacaggtggaactaacaggaaacagtatttatgaatatattcatccatccgaccatgacgaaa tgtctgccattctaacacttcatccccattttcacccacattttcctcaagattatgagattgaacgttcgtttttcata cgaatgaaatgcgttttggcaaaaaggaacgcgggtctgaccactgccggatataaggtcatacactgcagtggttacct taaaatcaaacaatttcccatggagatgtcgccatacgaggggtgttaccagaacgtggggctggtcgccgtgggacact cccttccccctagtgccatcactgaaatgaaactgttcaccaatatgttcatgttcagagccagtctagatctcaaactc atttacttggatccaggagtgtcgcagttgattggctacgaccctcagcatcttatagagaggacactgtatcagtatat tcatgcctgtgatattttacatatgagactttctcatcacacattgctcctgaaaggacaagtgaccacaaagtattacc gatttttggccaaagacggcggttggtactggatacagagttatgccaccattgtccacaacagtcgctcttcacggccg cattgtatcgtcagcgtcaactatgtgctcggagaggtggaatcaaggcaccttcaaatccagctagaacagactgttac gaaagaagcttcgccattctcaaatatgacgggtagatctcctagtggcaaagttagaactgcaaaatcaaaacaaagac gttctccgtatcctcatatagcggaaaatcccgagtactccggtgactttacggatagaattcacatggatttagtccca gattcaaatgctcaagactatcaaaacgtttttcagaattcaatgcatccattagacggtaatgagaaatatggccatat atatggacagtaccatactaatggtgttattagtgatatttatcaatatcaggcgcagcaaagatttatagacgagaaac tccaatgtaagatggaggataagggcatttattcaagaaatatgaattattataacggattcataggttctcaaaacgat atgatgagtacaaagttgactcacatggacccggttgaccctcggtcagatatgtctccccaatacgattacagaaatat gaattattataacggattcataggttctcaaaacgatatgatgagtacaaagttgactcacatggacccggttgaccctc ggtcagatatgtctccccaatacgattacagatcctcgcgccattgctccagaagcagcagccgagacccggcattcgga agcaaccagatgtatccttgtccatacagcaatagatccgagtcgtctgcttccgatgtagatgtcgtaaatgaagagta cgaaaaacgcagagagtatctggttgatcatggtggtcaaaccgttttgaaagacgagagctttaaatgtgaaggaatgg accctgaaaagtctatttctccagtacgtcaaacaattcaccaatcagtgataatgagaccaacacctcgcacgaatgtt cagtcagagaaaattccggataaaacatcaaagtctccttcatgtgcccgatctggtgatactcctgaagcaatgaaaat tgccgagggaccatctcccgaacacgccttctacccatcagccgacaaacttctagacatgcgcaatattcacgagaaag ggttctcgtcgcaagaaatctacactcaatgtctccgagctgcgtgtgcatacgattcatacaatcagtcgaacttaaat caaactgttcaaatgtcaaatcaaagacaatatcccgtgatgcctcaggctggatacactagtgttatagtggacaccca gcagtaccacatttctaatggttatgtacactga |
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Protein
| Protein ID | pfu_aug2.0_689.1_31058.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_689.1_31058.t1 MKDKSKTAARTRREKENAEFYELAKLLPLPSAITSQLDKASIIRLCTSYLKMRTVFPDGLGDAWGQRSPHRTLLEKELGS HLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIYEYIHPSDHDEMSAILTLHPHFHPHFPQDYEIERSFFI RMKCVLAKRNAGLTTAGYKVIHCSGYLKIKQFPMEMSPYEGCYQNVGLVAVGHSLPPSAITEMKLFTNMFMFRASLDLKL IYLDPGVSQLIGYDPQHLIERTLYQYIHACDILHMRLSHHTLLLKGQVTTKYYRFLAKDGGWYWIQSYATIVHNSRSSRP HCIVSVNYVLGEVESRHLQIQLEQTVTKEASPFSNMTGRSPSGKVRTAKSKQRRSPYPHIAENPEYSGDFTDRIHMDLVP DSNAQDYQNVFQNSMHPLDGNEKYGHIYGQYHTNGVISDIYQYQAQQRFIDEKLQCKMEDKGIYSRNMNYYNGFIGSQND MMSTKLTHMDPVDPRSDMSPQYDYRNMNYYNGFIGSQNDMMSTKLTHMDPVDPRSDMSPQYDYRSSRHCSRSSSRDPAFG SNQMYPCPYSNRSESSASDVDVVNEEYEKRREYLVDHGGQTVLKDESFKCEGMDPEKSISPVRQTIHQSVIMRPTPRTNV QSEKIPDKTSKSPSCARSGDTPEAMKIAEGPSPEHAFYPSADKLLDMRNIHEKGFSSQEIYTQCLRAACAYDSYNQSNLN QTVQMSNQRQYPVMPQAGYTSVIVDTQQYHISNGYVH |
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