Gene
| Gene Model ID | pfu_aug2.0_689.1_31061 |
|---|---|
| Locus | scaffold689.1 : 78502 ... 106145 : - |
| To GenomeBrowser | scaffold689.1:78502..106145 |
| Genes list of scaffold | scaffold689.1 |
| Synonym | pfu_aug1.0_1624.1_29786 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_689.1_31061.t1 | 1 | 1 | SNF2_N | 302 | 694 | 0.0 | 276.8 | 0.0 | 0.0 | 275.9 |
| pfu_aug2.0_689.1_31061.t1 | 3 | 1 | zf-RING_2 | 523 | 531 | 2.2e-06 | 27.3 | 4.2 | 6900.0 | -3.1 |
| pfu_aug2.0_689.1_31061.t1 | 3 | 2 | zf-RING_2 | 937 | 952 | 2.2e-06 | 27.3 | 0.47 | 780.0 | 0.0 |
| pfu_aug2.0_689.1_31061.t1 | 3 | 3 | zf-RING_2 | 1118 | 1166 | 2.2e-06 | 27.3 | 1.3e-09 | 2.2e-06 | 27.3 |
| pfu_aug2.0_689.1_31061.t1 | 1 | 1 | Helicase_C | 1251 | 1308 | 9.2e-06 | 25.4 | 1.2e-08 | 2.0e-05 | 24.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_689.1_31061.t1 | gi|597776696|ref|XP_007252026.1| | PREDICTED: E3 ubiquitin-protein ligase SHPRH [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_689.1_31061.t1 | gi|688593527|ref|XP_009291105.1| | PREDICTED: E3 ubiquitin-protein ligase SHPRH isoform X2 [Danio rerio] | 0.0 |
| pfu_aug2.0_689.1_31061.t1 | gi|326675456|ref|XP_003200358.1| | PREDICTED: E3 ubiquitin-protein ligase SHPRH isoform X1 [Danio rerio] | 0.0 |
| pfu_aug2.0_689.1_31061.t1 | gi|719785368|ref|XP_010222920.1| | PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SHPRH [Tinamus guttatus] | 0.0 |
| pfu_aug2.0_689.1_31061.t1 | gi|697460685|ref|XP_009667057.1| | PREDICTED: E3 ubiquitin-protein ligase SHPRH isoform X1 [Struthio camelus australis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_689.1_31061.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_689.1_31061.t1 atggggaagagaaaggggaatccccagagggcatctgcagagaaacgacaatgtatgtcatggaatatgtaccaaggaga ggcaggaccttctcaatcattaccgattgtcaacgatcatagtgcaagcctactacacgaaatacaaaaggcagaaaaag aagtctgcggcaggaattcaggaaaagatgccaccgaatttatacaaaattcagacacttcaaccttcagcaatcaggac atacaacagttgtttgatggactattagaaaattgcttgttttttatacctttgacaaaaaatctgaccagaaaggctga ggaagatatttattgcttcggcaatttctccataaaatggtgtcaaggtccacatcagtctgtgcccccgtccaaactcc cagataactacacctgctggctttacgtcagtcaagtacccaatcagaacatgctgtattttgagattgaagaaaataac gagaatttacccagtgaatccggcatacagaaaagttctacattctggtgtgtacaggtggacctttctataaaagtact tgagtccctcaagaacaacaaggttttccaagtgttcatacaagattttgatgcgtcaaatcactgcctcacggtctctg tacatggtaccagtaaccttctgtccagtccggcctctagatttgtactgtccacaggcagactgaccagtgtccagcag gctgtccaaaatgtactctgtcatttcttcaatttgcacatggaaacctatgaaggaaggacgtattcaaagaaacatga catacagaagctatatgatcacgttaagaacttccacatgctgacagagtttgaccatggcgtagatttgcaacatcctg atctgtgtcccacactcagaccctatcagaaacgggcaattaactggatgcttcacaaagaaaggttcaacaattatcaa gcatcttcagatcaaactgagcttcacacactattccaggaaataacgactcttgacggccagacgttatatttcaataa atatgcaggaagattagaagctgagcggccatgcaaggtgaggccccctcctggtgggatcctggcggatgaaatgggac tcggtaaaacggtagagatgctggcgtgtataatggctcatcgtcgtgaaggcgtggagcagccaagtcccttacctgtg ctggatcagatgactcccattgtgtcaggtgctaccctgatcatctcaccagcttctatatgtcaccagtgggtagagga gattgtgaagcatatcaggaaagaatctctcaatgtttttgtttataaaggagtcgggaagcatggattcatacagcccc ttacattggtcaaacaggacatcgtcatcaccacgtacgaggcactgcggaaggaaatcaactttgtcaatctacctcac agcaacgtccatccgtctgttcttgaatttgtggatagtatacagactgacttggccataggatgttcatacatgcactt ccgacaagaggaagaaccttatagaatctcaaggtcaaaggacaagatttgtctggatgaagctcaaatggtagaaagta ctactgctaaggctgctgaaatggccctaaaactaacaacagtaaatagatggtgtgctacgggtacccccattcaaaaa gggattgaagatctgtatggtttactactgtttttgggaattgatccttattggcagaaatgttggtttgacaagcttct ttataaaccgttgtgctacggcgtacaaaccccaatgagtaatgttatctcccaggttctgtggagaacggtgaaaaaag atgtcattgatcagatcaacatacccaagcaaacagagcaagttcattggctgaccttttcacccattgaggatcatttt tacaaaagacagtatgacacgtccatcaatgactcactgaagagactcagtaagtggacagatcacacagtcaagctaag tagcctggacaggcaaactctcaatcagcttctgtatccattgctaaggttacgtcaggcatgctgtcacccccaggctg tcaggggagagttcatcccccttcatctcaggaaaactgctatgacaatggaggagctattagaatctctaaccaagaag gccaccatcgagtgtgaggaggctcatcgtctacttgtagcggccttcaatgggctggctggatggcacattatcaagaa tcagtattcagaagctgtagaaatgtacagggaggtgttaaggtctatagaggaacacaaggccagactacgtactgatg atctacagctgttacacgccctgtataatctgaatgaggtactgatgctaaaacctgtgggtatacacccaacactcagg gatgaccagctgttagatcagattgaagatttgaagaaaaagtacattctgaaatccaagagtgtggtagtacacgtcca ggaacaattaactcccatcagggcagatattttgaaatatcaaaaagagttaaggagaggacagagttggtgggtagaga tcatggaacattgtgtggagagagacctggatgatgatcttatactacatgtcaaagaggaaatagataaagagaaagga agcaagaccatgtccatatccagatcattccgtaacgtcaggggattagagtttatactgaacgacaaattagttgccat ggagacagcctacgaggcagtaaaagagagcatggtgagactgagtaaggacccgtcacaggatctgattaacgaggcaa cagactgctgtcttagacctataggcaaaatcaaagccacatgtcctttttgtaagacctcgggtctctttgaagagtat gaatccaagttattctcatttactgaccaaggcttgactacagacgcagatggtgatttctctgtaagcacaaagcgaca agggacgtgggcagacagcgacacagaaaaagctctcaaagctattctaggatttgcaaaacaaaagtttggtaagccat caagaattttcataaaatctatatttcagcctttccgtaatttgtggattgaactgaaggcacatgtagcatcatttgac gagatcagcatggcaaccaccagattgaggctgagactacctgacgaaccaaaaccagacaacacccaaatgaacatcat agaaccatgtgagctgggacatcacaaattaaagctagattcagacagaaccatagccagaaatgaactgaggaagaagt taggtcaacaactgtaccttcaaaagttagcagaggcacaacagggaagtgaaaatgcggagaatccagatccatgtcct atatgtcagaaagaactaggaaaagagtggagtgtgctacagtgtggccattgttactgcctagagtgtatccgtactct atgtgagttgtacagcttcggaggtcgtaatcgtcaggtcacgtgtgcactctgcagggataaaactttccattctgata tatcgtacgtcagcaccatcagaaaaacggaagtcaatgaacagagtgtcaagggaagccattccagtaagatacaagga gttgtgaaatgtctgaagcaaatacaacaagatgatcctggtgccaaggctctagtcttctccacttggacagatgtatt gagcgtgatatctcaggctctggaagaaaatggtatatctcacaaaactttacagagtggagcaagatttcagaaaaatc tatcagccttcaaggacaatgagaaaataaccaccctgttactccccattcattccggagctaatggtcttaacattata gaggctacgtacgtcctgctggtagaacccgtccttaatcctgctcaggaactacaggccatcggcagaatccatcgtat aggacaaactaagccaactcaagtacatagatttctggtgaagggaacgattgaagagaagatgtatacgatgctgaagn aaatcagaaattctcatcaacaagttgaaagtaatgaaatgagaaattctcagcaacacatcgaaagtgatcctaacatt caaagtggagaagatgttgaaatcagaaattctcaacaacaagttgaaaggaatgaaaggagaaattctcaacaacaagt tgaaaacaatccagcctccctgtttgaagaagatgattctgaaatgaggaattcccatgaacaagttgaaaacagaccag aaattttgaacggagatcgtagagagtttagaaatcatcaacaaggagttgaaactaatccagacattctgagtggagaa gatgatactgagatgagaaattctaattga |
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Protein
| Protein ID | pfu_aug2.0_689.1_31061.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_689.1_31061.t1 MGKRKGNPQRASAEKRQCMSWNMYQGEAGPSQSLPIVNDHSASLLHEIQKAEKEVCGRNSGKDATEFIQNSDTSTFSNQD IQQLFDGLLENCLFFIPLTKNLTRKAEEDIYCFGNFSIKWCQGPHQSVPPSKLPDNYTCWLYVSQVPNQNMLYFEIEENN ENLPSESGIQKSSTFWCVQVDLSIKVLESLKNNKVFQVFIQDFDASNHCLTVSVHGTSNLLSSPASRFVLSTGRLTSVQQ AVQNVLCHFFNLHMETYEGRTYSKKHDIQKLYDHVKNFHMLTEFDHGVDLQHPDLCPTLRPYQKRAINWMLHKERFNNYQ ASSDQTELHTLFQEITTLDGQTLYFNKYAGRLEAERPCKVRPPPGGILADEMGLGKTVEMLACIMAHRREGVEQPSPLPV LDQMTPIVSGATLIISPASICHQWVEEIVKHIRKESLNVFVYKGVGKHGFIQPLTLVKQDIVITTYEALRKEINFVNLPH SNVHPSVLEFVDSIQTDLAIGCSYMHFRQEEEPYRISRSKDKICLDEAQMVESTTAKAAEMALKLTTVNRWCATGTPIQK GIEDLYGLLLFLGIDPYWQKCWFDKLLYKPLCYGVQTPMSNVISQVLWRTVKKDVIDQINIPKQTEQVHWLTFSPIEDHF YKRQYDTSINDSLKRLSKWTDHTVKLSSLDRQTLNQLLYPLLRLRQACCHPQAVRGEFIPLHLRKTAMTMEELLESLTKK ATIECEEAHRLLVAAFNGLAGWHIIKNQYSEAVEMYREVLRSIEEHKARLRTDDLQLLHALYNLNEVLMLKPVGIHPTLR DDQLLDQIEDLKKKYILKSKSVVVHVQEQLTPIRADILKYQKELRRGQSWWVEIMEHCVERDLDDDLILHVKEEIDKEKG SKTMSISRSFRNVRGLEFILNDKLVAMETAYEAVKESMVRLSKDPSQDLINEATDCCLRPIGKIKATCPFCKTSGLFEEY ESKLFSFTDQGLTTDADGDFSVSTKRQGTWADSDTEKALKAILGFAKQKFGKPSRIFIKSIFQPFRNLWIELKAHVASFD EISMATTRLRLRLPDEPKPDNTQMNIIEPCELGHHKLKLDSDRTIARNELRKKLGQQLYLQKLAEAQQGSENAENPDPCP ICQKELGKEWSVLQCGHCYCLECIRTLCELYSFGGRNRQVTCALCRDKTFHSDISYVSTIRKTEVNEQSVKGSHSSKIQG VVKCLKQIQQDDPGAKALVFSTWTDVLSVISQALEENGISHKTLQSGARFQKNLSAFKDNEKITTLLLPIHSGANGLNII EATYVLLVEPVLNPAQELQAIGRIHRIGQTKPTQVHRFLVKGTIEEKMYTMLKXIRNSHQQVESNEMRNSQQHIESDPNI QSGEDVEIRNSQQQVERNERRNSQQQVENNPASLFEEDDSEMRNSHEQVENRPEILNGDRREFRNHQQGVETNPDILSGE DDTEMRNSN |
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