Gene
| Gene Model ID | pfu_aug2.0_690.1_01054 |
|---|---|
| Locus | scaffold690.1 : 133326 ... 179664 : + |
| To GenomeBrowser | scaffold690.1:133326..179664 |
| Genes list of scaffold | scaffold690.1 |
| Synonym | pfu_aug1.0_5362.1_09108 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| integrin alpha-9 | GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_690.1_01054.t1 | 2 | 1 | Integrin_alpha2 | 321 | 723 | 0.0 | 193.4 | 0.0 | 0.0 | 176.0 |
| pfu_aug2.0_690.1_01054.t1 | 2 | 2 | Integrin_alpha2 | 758 | 899 | 0.0 | 193.4 | 1.5e-08 | 5.4e-05 | 22.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_690.1_01054.t1 | gi|742228758|ref|XP_010900474.1| | PREDICTED: integrin alpha-9 [Esox lucius] | 1.0e-35 |
| pfu_aug2.0_690.1_01054.t1 | gi|724889450|ref|XP_010374936.1| | PREDICTED: integrin alpha-9, partial [Rhinopithecus roxellana] | 2.0e-35 |
| pfu_aug2.0_690.1_01054.t1 | gi|505842247|ref|XP_004614631.1| | 2.0e-35 | |
| pfu_aug2.0_690.1_01054.t1 | gi|332215536|ref|XP_003256900.1| | PREDICTED: integrin alpha-9 [Nomascus leucogenys] | 3.0e-35 |
| pfu_aug2.0_690.1_01054.t1 | gi|52485941|ref|NP_002198.2| | integrin alpha-9 precursor [Homo sapiens] | 4.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_690.1_01054.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_690.1_01054.t1 atggcgtctgcagtttcaccataccttgggtggcagttgataggaacaaactgtcaaccaatcagatttacatctgcaga gaataccaatccatctcctgtttctggtatttacgaacaaactgagcagaatctaggttcaagtattctcgtaggttcac aggcagtggtgatctgtgcgccattatggaagaatttaagagattatccgtcaaacagatattataatcccgttggacat tgttacgaactgccacattcagatttgacaaatgtcaaatcaaagttttttcgaataggtagaaatgaatggcaaatcag agatagtggtggtgccacggtccaactttacgcaagcgcattgcttggatttagtttgacaacgagtccagtaagttctg tgataaaactcttcattattttgtcaataggaggattttctttgtacaaggaggatgacgacagtactggctttgtggat aaattaacagtgagggattcaccagacaccgataacactatgacgtcaggatcgtatatgggttacgcagtggcatccgg gcgtttcggaagcggactgacgccgatgccgcaagtcgtggtaggatctcccggatacactagttccaacggaccggttg gcgcggtaacactattggagacgtttctttccaccattagtccgcgagcacaacaaagaaagcagttcgtaggcagagag gtagatctcgcagtcggtgctccttacgaagacagtggacgtggcgccatctacatcttcaatggcgacgaggcccgttt gccttcgcagtattcccagaaaatcatggccgctgccattgattctggcttaagggcgtttggattttatctttcaaagt caacactagacgtcgatgacaattcttacaatgactttgcagtaggagcttatcagtcagaccatactgtgatactgagg tcaaggccaattattgtcctgacaaccagatttacagtgccccctaacgtcccattaaactccaccaatcaggagtgtag tacaggaaatacaagtctgccatgtgtcacactcaacctgtgcttctcctttaccggtagaggagttaactcgggaatat taattgactactggataagggcagatactttgaaaacaagcaagcgtcagccaagtcgtgtcaatttattcctaaatgga gttgataggacggatgtgtttaacagaacagagctttcggtgtcaaaaactggagaaacatgtgaaaagatatatgcaag agtaaatactttagaccgctatttcttccaatcaatagcagaacagcttgtgttctcagtcaacttcgagttaagtaaca gttccgacagtgttacgccagtgttagctaacgacatcgctaaagaacgcactatgactacaaaatttgataccggttgc gccaccacttgtaactcaaatctaaagatagacatgtccatggacaatcaggatgtcattttgggagaaaccagagaaat cgttgtcagagtcacaataagtaacatgggagagcctgcatacgctgcatccgtcatcattgaaccatcggccaacacgg cgttcaggggatttgaccaggacacatctatcagtaatgtccgagtatcctgctccaggcttgagaacagaacaacagtc cagtgtgatttccaaactccgatcctaatcaatatcagagggacgttcagtgttcggtttgatgcctccagagaacgcat actgcctcagaattctaattctacagtattcagccaaagcatacaaataaacgccaccgttagggacaatgctgaaggat ctagagatcaggatgccagcgataattttgcctctcaaagggcaaatattcgactacgatcggacgtaatcatcagtgga atttccaaccccgagcaggcaaaatttacagtgtccaggaacggctacatcagcttcatccagcggtacacagtggacaa taacggaccaagcccctcccccggggctatgatctatatagacctacccgtaagatccacggaggagatgaagtacctga ccaccaggaatgctattaagataagaacagactctgaatccgattcctgtagccttttgtcattcccggatagagtaaaa cgtgaaaccatgccagaggttccggaaacgtcaaagcttactaccgatgagaagtaccaggatgttactttagaccgcta tttcttccaatcaatagcagaacagcttgtgttctcagtcaacttcgagttaagtaacagttccgacagtgttacgccag taatctctaaccccgagcaggcaaagtttacagtgtccaggaacagctacatcagctttacccagcggtacacagtggac aataacggaccaagcccttcccccggggctatgatctatatagacctacccgtaagatccacggacgagatgaagtacct gaccaccaggaatgccatcaagataagaacagactctgaatccgattcatgtagcgttgtgtcattcccgaatagagtaa aacgtgaaaccatgccagaggttccggaaacgtcaaagcttactaccgatgagaagtaccaggatgttgcttgctcaaga attacagagaaagacgaaaaataccagctgaaatacgactgtgccaggataagatgcatggtcagtttcttagagtacaa acagttcagaaatatagaaattactctcaacttgacggagtctgctctacctggaattatacagggatcatcttttgtga ggtattttactgaggccactgtctatcctcccgtcaacttaaatattccttatgaacaaacaaggaacaccactgcattt gcatccatggacgtattccctatcgtggtggaagctcaaacagaaccactcaatatctggattatcattggcggatcagt gggtggattgctcttcttaatcattataggaatcattctgtggaagtgtggatttttcaaacgagagaagagagatcagc tcaccgactacaaaagaaaaacaatgatgcaacttcgtcaaagtaggatgagcatgcgcagtgggcgagcagcgccacct gtcgatcaagaacgaatactcaatgaaaacgaaggagagtag |
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Protein
| Protein ID | pfu_aug2.0_690.1_01054.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_690.1_01054.t1 MASAVSPYLGWQLIGTNCQPIRFTSAENTNPSPVSGIYEQTEQNLGSSILVGSQAVVICAPLWKNLRDYPSNRYYNPVGH CYELPHSDLTNVKSKFFRIGRNEWQIRDSGGATVQLYASALLGFSLTTSPVSSVIKLFIILSIGGFSLYKEDDDSTGFVD KLTVRDSPDTDNTMTSGSYMGYAVASGRFGSGLTPMPQVVVGSPGYTSSNGPVGAVTLLETFLSTISPRAQQRKQFVGRE VDLAVGAPYEDSGRGAIYIFNGDEARLPSQYSQKIMAAAIDSGLRAFGFYLSKSTLDVDDNSYNDFAVGAYQSDHTVILR SRPIIVLTTRFTVPPNVPLNSTNQECSTGNTSLPCVTLNLCFSFTGRGVNSGILIDYWIRADTLKTSKRQPSRVNLFLNG VDRTDVFNRTELSVSKTGETCEKIYARVNTLDRYFFQSIAEQLVFSVNFELSNSSDSVTPVLANDIAKERTMTTKFDTGC ATTCNSNLKIDMSMDNQDVILGETREIVVRVTISNMGEPAYAASVIIEPSANTAFRGFDQDTSISNVRVSCSRLENRTTV QCDFQTPILINIRGTFSVRFDASRERILPQNSNSTVFSQSIQINATVRDNAEGSRDQDASDNFASQRANIRLRSDVIISG ISNPEQAKFTVSRNGYISFIQRYTVDNNGPSPSPGAMIYIDLPVRSTEEMKYLTTRNAIKIRTDSESDSCSLLSFPDRVK RETMPEVPETSKLTTDEKYQDVTLDRYFFQSIAEQLVFSVNFELSNSSDSVTPVISNPEQAKFTVSRNSYISFTQRYTVD NNGPSPSPGAMIYIDLPVRSTDEMKYLTTRNAIKIRTDSESDSCSVVSFPNRVKRETMPEVPETSKLTTDEKYQDVACSR ITEKDEKYQLKYDCARIRCMVSFLEYKQFRNIEITLNLTESALPGIIQGSSFVRYFTEATVYPPVNLNIPYEQTRNTTAF ASMDVFPIVVEAQTEPLNIWIIIGGSVGGLLFLIIIGIILWKCGFFKREKRDQLTDYKRKTMMQLRQSRMSMRSGRAAPP VDQERILNENEGE |
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