Gene
| Gene Model ID | pfu_aug2.0_6935.1_19549 |
|---|---|
| Locus | scaffold6935.1 : 5956 ... 16271 : + |
| To GenomeBrowser | scaffold6935.1:5956..16271 |
| Genes list of scaffold | scaffold6935.1 |
| Synonym | pfu_aug1.0_8023.1_38680 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protoheme ix mitochondrial | GO:0002094 GO:0008495 GO:0016021 GO:0048034 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_6935.1_19549.t1 | 1 | 1 | UbiA | 186 | 248 | 4.2e-07 | 29.4 | 7.2e-11 | 5.4e-07 | 29.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_6935.1_19549.t1 | gi|260824085|ref|XP_002606998.1| | hypothetical protein BRAFLDRAFT_117595 [Branchiostoma floridae] | 1.0e-32 |
| pfu_aug2.0_6935.1_19549.t1 | gi|676428910|ref|XP_009045429.1| | hypothetical protein LOTGIDRAFT_64495, partial [Lottia gigantea] | 1.0e-31 |
| pfu_aug2.0_6935.1_19549.t1 | gi|156404272|ref|XP_001640331.1| | predicted protein [Nematostella vectensis] | 2.0e-31 |
| pfu_aug2.0_6935.1_19549.t1 | gi|657579096|ref|XP_008293452.1| | PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like, partial [Stegastes partitus] | 3.0e-31 |
Transcript
| Transcript ID | pfu_aug2.0_6935.1_19549.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_6935.1_19549.t1 atgctgcgatttgtggcgaaagcagtagctgaacaaccgtgttttggttgcctgttttctctgcaaaggtcctcatgtct tgtggatactagaaggttttcaaggagaacagctactatagagaaagatgaggaaaatgatgtttctccagataagatta gagacatgagtgacaaaaatcctgcaatttccaaaacttcagaaccaaggacaaaattgaagaaaagaaaagtgctacat ccagaaagcaatgatgataaataccttctattccataagaaatcaaagacattgttagaacttagtaagattcaagacga tcaggattttagtgtttctttcatatttccaaggacttcggagatgatacattttagtgcgagacctcgtgattataatt ccctacagcagacattacaacaagagaagaatgaaacaaatccggccagtcaagtggactctatagaagactccatgtgg gtagaaatgaagaccgatatgtccaaactaacagattactatcttaggttgtccaaaataagattaacaggtttggtagt actaacttccatggctggatatgccatggctcctcttccatttgattttctgaccttcacctctgctacctttggaacag ctttgacatcctgttcagcaaatgccgtaaatcagtattttgaggtaccatttgattcccagatgaacagaacgaagaac cgagtaattgttaaaggattgatcag |
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Protein
| Protein ID | pfu_aug2.0_6935.1_19549.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_6935.1_19549.t1 MLRFVAKAVAEQPCFGCLFSLQRSSCLVDTRRFSRRTATIEKDEENDVSPDKIRDMSDKNPAISKTSEPRTKLKKRKVLH PESNDDKYLLFHKKSKTLLELSKIQDDQDFSVSFIFPRTSEMIHFSARPRDYNSLQQTLQQEKNETNPASQVDSIEDSMW VEMKTDMSKLTDYYLRLSKIRLTGLVVLTSMAGYAMAPLPFDFLTFTSATFGTALTSCSANAVNQYFEVPFDSQMNRTKN RVIVKGLI |
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