Gene
| Gene Model ID | pfu_aug2.0_694.1_14471 |
|---|---|
| Locus | scaffold694.1 : 60474 ... 91745 : - |
| To GenomeBrowser | scaffold694.1:60474..91745 |
| Genes list of scaffold | scaffold694.1 |
| Synonym | pfu_aug1.0_66888.1_34764 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| integrator complex subunit 4- partial | GO:0005515 GO:0016180 GO:0032039 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_694.1_14471.t1 | 4 | 1 | HEAT_2 | 53 | 110 | 2.9e-09 | 37.0 | 0.0011 | 1.2 | 9.4 |
| pfu_aug2.0_694.1_14471.t1 | 5 | 1 | HEAT | 64 | 84 | 6.0e-09 | 35.2 | 0.13 | 150.0 | 2.8 |
| pfu_aug2.0_694.1_14471.t1 | 5 | 2 | HEAT | 138 | 160 | 6.0e-09 | 35.2 | 0.064 | 73.0 | 3.8 |
| pfu_aug2.0_694.1_14471.t1 | 4 | 2 | HEAT_2 | 143 | 237 | 2.9e-09 | 37.0 | 1.6e-07 | 0.00018 | 21.6 |
| pfu_aug2.0_694.1_14471.t1 | 5 | 3 | HEAT | 182 | 205 | 6.0e-09 | 35.2 | 0.00011 | 0.13 | 12.4 |
| pfu_aug2.0_694.1_14471.t1 | 4 | 3 | HEAT_2 | 219 | 253 | 2.9e-09 | 37.0 | 0.015 | 17.0 | 5.7 |
| pfu_aug2.0_694.1_14471.t1 | 5 | 4 | HEAT | 221 | 245 | 6.0e-09 | 35.2 | 0.0003 | 0.35 | 11.0 |
| pfu_aug2.0_694.1_14471.t1 | 5 | 5 | HEAT | 275 | 294 | 6.0e-09 | 35.2 | 5.2 | 5900.0 | -2.1 |
| pfu_aug2.0_694.1_14471.t1 | 4 | 4 | HEAT_2 | 276 | 294 | 2.9e-09 | 37.0 | 4.0 | 4500.0 | -2.1 |
| pfu_aug2.0_694.1_14471.t1 | 1 | 1 | Acetyltransf_1 | 385 | 477 | 6.0e-12 | 45.4 | 1.0e-14 | 1.2e-11 | 44.4 |
| pfu_aug2.0_694.1_14471.t1 | 1 | 1 | Acetyltransf_7 | 403 | 478 | 1.0e-05 | 25.5 | 2.1e-08 | 2.3e-05 | 24.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_694.1_14471.t1 | gi|260800692|ref|XP_002595231.1| | hypothetical protein BRAFLDRAFT_283451 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_694.1_14471.t1 | gi|585702794|ref|XP_006823130.1| | PREDICTED: integrator complex subunit 4-like, partial [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_694.1_14471.t1 | gi|701300402|ref|XP_010010643.1| | PREDICTED: integrator complex subunit 4-like, partial [Nestor notabilis] | 0.0 |
| pfu_aug2.0_694.1_14471.t1 | gi|573879306|ref|XP_006627872.1| | PREDICTED: integrator complex subunit 4-like [Lepisosteus oculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_694.1_14471.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_694.1_14471.t1 atggaggagccaaaacctgttaaaaggttgagattgatccagaaacctccgcaaactgaagttaaccttgaccttcaagg ggtcacttcttcacatgaggctttgaacagacttctacgctttgaagatagcttaaatgaaggtgcaaacatatcggcaa atactgtgcgagaacttctggaccattaccatcatgagaaagaatctttggtacgcagcaaggttgcacagattcttgga aagctggggaaatttcagcagttcaataaagaaaacctgatagaagatgtcatgatgttgctaaatggagaaaagtctca caaggtgctaagctcccttattttctgtctacaaacattaggatccacacttcatgaggcatctgatatacactcacaaa ttatagcagttgctgaaaagcatgtaagtaatcctgaccacagagtgagatgtaggtgcttggagctgattggttgcctc ggtggtcgtcctcataccgcaaaccaagctcacgactctgatgtcagtacgtcttgtcagtccgttctcactagtttctg ccaagatcaggatcccagggtacgctcgagtgcttttgctgccatgcttcagtttcaccagcgaagcttgtcactccctc tgactgtatacaagcaggcctgccaagctctcgatgatgattttgaggacgtccgtctgtctgctgtcaaacttatttgg gtgctgtgtcaaatctatccagaaagtatggtgccagtgtcggctaaaaagacggaatcggaggacgaaatacgtctcgt ggatgatggatttgccaagatatgtaatatggtcaatgatatctctgtcagagtcagagtggaagcatcaaatctactga cggacggacggaagaacggaagaacggagaggaatattctccccgaggttttatttcatcgaaaatcagaaaccgaaggc atacaaaatcaggataaaacaggaaccaaagcaaataaacaaaaacctccaccacgtgaaaagaagcgaactcccgatat gggagtgagaccaagtgcccaggaagatttgcccgaccttgctgttgccttgggtcacgagtttaggggccaggaaagcc ttttctacgaacgaaacataataggcgagatggatggggagaaagctggacacatgtcaatagccttccatgaggaccct gatacagtaatggcatgtctacgaagtgtcatgagggaagaaatacagaaagaccagtgtcttatccatcatgtttgtgt ggaagttgaagcaaggaggaagggcgtggcttctgctctcctggaatgggcggagaaagagtcacgtcgcaaaggttgcc atgctgtttacacgtggttgcccactaacaatagggcagggcggagtctatatagtaaccatggttacagagaggaggac cgtacaagtaaatgttgttgtggactgtggtgtgccataggaatatgtgtaagcgaggctatcaataatgcaaacatctg tccagtagctagacgagctgtcaagatggtgaagcaactctga |
|
Protein
| Protein ID | pfu_aug2.0_694.1_14471.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_694.1_14471.t1 MEEPKPVKRLRLIQKPPQTEVNLDLQGVTSSHEALNRLLRFEDSLNEGANISANTVRELLDHYHHEKESLVRSKVAQILG KLGKFQQFNKENLIEDVMMLLNGEKSHKVLSSLIFCLQTLGSTLHEASDIHSQIIAVAEKHVSNPDHRVRCRCLELIGCL GGRPHTANQAHDSDVSTSCQSVLTSFCQDQDPRVRSSAFAAMLQFHQRSLSLPLTVYKQACQALDDDFEDVRLSAVKLIW VLCQIYPESMVPVSAKKTESEDEIRLVDDGFAKICNMVNDISVRVRVEASNLLTDGRKNGRTERNILPEVLFHRKSETEG IQNQDKTGTKANKQKPPPREKKRTPDMGVRPSAQEDLPDLAVALGHEFRGQESLFYERNIIGEMDGEKAGHMSIAFHEDP DTVMACLRSVMREEIQKDQCLIHHVCVEVEARRKGVASALLEWAEKESRRKGCHAVYTWLPTNNRAGRSLYSNHGYREED RTSKCCCGLWCAIGICVSEAINNANICPVARRAVKMVKQL |
|